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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_2393 and Ac3H11_2394 are separated by 95 nucleotides
Ac3H11_2394 and Ac3H11_2395 are separated by 260 nucleotides
Ac3H11_2395 and Ac3H11_2396 are separated by 116 nucleotides
Ac3H11_2396 and Ac3H11_2397 are separated by 130 nucleotides
Ac3H11_2393 - hypothetical protein, at 651,042 to 651,185
_2393
Ac3H11_2394 - hypothetical protein, at 651,281 to 651,481
_2394
Ac3H11_2395 - D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95), at 651,742 to 652,749
_2395
Ac3H11_2396 - ABC transporter for glutamine/isoleucine/leucine/phenylalanine/proline/serine/tyrosine, substrate-binding component
(from data)
, at 652,866 to 653,993
_2396
Ac3H11_2397 - Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12), at 654,124 to 654,384
_2397
Group
Condition
Ac3H11
_2393
Ac3H11
_2394
Ac3H11
_2395
Ac3H11
_2396
Ac3H11
_2397
carbon source
pyruvate (C)
-0.7
-0.2
-5.6
-0.6
+0.0
carbon source
pyruvate (C)
-0.1
-0.2
-5.9
-0.6
+0.0
carbon source
D-Lactate (C)
-0.8
-0.2
-5.8
+0.0
-0.0
nitrogen source
L-Proline (N)
+0.2
-0.2
-2.1
-3.9
-0.3
carbon source
L-Lactate (C)
-0.2
-0.0
-5.7
+0.0
-0.2
carbon source
D-Glucose (C)
-0.2
-0.2
-6.0
+0.2
+0.1
nitrogen source
L-tyrosine (N)
+0.4
-0.2
-3.5
-1.9
-0.6
carbon source
succinate (C)
-0.3
+0.0
-5.5
+0.1
-0.1
carbon source
D,L-Lactate (C)
-0.2
+0.0
-5.8
+0.1
+0.1
pH
LB, pH8
-0.6
-0.3
-4.7
-0.0
-0.1
nitrogen source
L-Phenylalanine (N)
+0.2
+0.0
-2.6
-3.0
-0.1
nitrogen source
L-Isoleucine (N)
+0.0
-0.5
-3.8
-1.1
+0.1
carbon source
succinate (C)
-0.5
-0.7
-4.0
+0.1
-0.1
nitrogen source
L-Leucine (N)
+0.1
-0.1
-0.3
-4.6
-0.2
carbon source
D-Galactose (C)
-1.4
+0.0
-3.8
-0.0
+0.1
pH
LB, pH9
+0.3
-0.1
-4.7
-0.0
-0.4
stress
Cobalt chloride 0.16 mM
-0.3
-0.2
-4.4
+0.5
-0.2
pH
LB, pH5
+0.4
+0.2
-4.0
-0.3
-0.7
stress
Sisomicin 0.004 mg/ml
+0.6
+0.1
-4.5
+0.0
-0.1
nitrogen source
L-Histidine (N)
+0.9
+0.1
-4.7
-0.2
+0.2
pH
LB, pH8
+1.1
-0.1
-4.1
-0.1
-0.3
stress
nitrate 20 mM
+0.7
+0.3
-4.3
+0.2
+0.1
stress
Tetracycline 0.0001 mg/ml
+0.3
+0.2
-4.1
+0.1
+0.7
stress
Chlorite 0.1 mM
-0.5
+0.4
-3.2
+1.1
-0.3
stress
A22 0.025 mg/ml
+1.0
-0.1
-4.0
+0.9
-0.1
motility
inner cut, R2A soft agar motility assay
+0.7
+0.7
-3.5
+0.3
-0.2
lb
LB
+0.3
+0.5
-3.1
+0.9
-0.5
stress
Cobalt chloride 0.32 mM
+0.9
+0.7
-3.3
+0.5
-0.2
stress
perchlorate 10 mM
+1.1
+0.4
-3.4
+1.0
-0.2
stress
Cisplatin 0.005 mg/ml
+1.4
+0.0
-3.0
+1.1
+0.4
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