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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_2377 and Ac3H11_2378 are separated by 226 nucleotides
Ac3H11_2378 and Ac3H11_2379 are separated by 304 nucleotides
Ac3H11_2379 and Ac3H11_2380 overlap by 14 nucleotides
Ac3H11_2380 and Ac3H11_2381 overlap by 1 nucleotides
Ac3H11_2377 - Isocitrate dehydrogenase [NADP] (EC 1.1.1.42), at 638,723 to 639,982
_2377
Ac3H11_2378 - miscellaneous; unknown, at 640,209 to 640,412
_2378
Ac3H11_2379 - exported protein, at 640,717 to 641,154
_2379
Ac3H11_2380 - hypothetical protein, at 641,141 to 641,329
_2380
Ac3H11_2381 - Superoxide dismutase [Fe] (EC 1.15.1.1), at 641,329 to 641,910
_2381
Group
Condition
Ac3H11
_2377
Ac3H11
_2378
Ac3H11
_2379
Ac3H11
_2380
Ac3H11
_2381
nitrogen source
Uridine (N)
-1.1
N.D.
-1.0
N.D.
N.D.
nitrogen source
Ammonium chloride (N)
-0.6
N.D.
-1.2
N.D.
N.D.
nitrogen source
L-Threonine (N)
-0.6
N.D.
-0.8
N.D.
N.D.
stress
Sisomicin 0.0005 mg/ml
-0.2
N.D.
-1.0
N.D.
N.D.
lb
LB
-0.3
N.D.
-0.8
N.D.
N.D.
nitrogen source
L-Proline (N)
-0.3
N.D.
-0.8
N.D.
N.D.
nitrogen source
L-Alanine (N)
-0.2
N.D.
-0.8
N.D.
N.D.
carbon source
Tween 20 (C)
-0.3
N.D.
-0.7
N.D.
N.D.
stress
Chlorate 20 mM
-0.2
N.D.
-0.7
N.D.
N.D.
nitrogen source
L-Leucine (N)
-0.5
N.D.
-0.4
N.D.
N.D.
nitrogen source
L-Histidine (N)
-0.5
N.D.
-0.5
N.D.
N.D.
nitrogen source
L-Serine (N)
-0.3
N.D.
-0.6
N.D.
N.D.
stress
copper (II) chloride 1 mM
-0.2
N.D.
-0.7
N.D.
N.D.
stress
Polymyxin B sulfate 0.0001 mg/ml
-0.2
N.D.
-0.7
N.D.
N.D.
carbon source
D-Mannose (C)
-0.2
N.D.
-0.7
N.D.
N.D.
stress
Nickel (II) chloride 0.6 mM
-0.1
N.D.
-0.7
N.D.
N.D.
stress
Cisplatin 0.005 mg/ml
+0.3
N.D.
-0.9
N.D.
N.D.
stress
Chlorite 0.1 mM
+0.3
N.D.
-0.6
N.D.
N.D.
stress
perchlorate 10 mM
+0.4
N.D.
-0.7
N.D.
N.D.
stress
Fusidic 0.001 mg/ml
+0.3
N.D.
-0.5
N.D.
N.D.
lb
LB
+0.4
N.D.
-0.6
N.D.
N.D.
stress
Cisplatin 0.0025 mg/ml
+0.4
N.D.
-0.5
N.D.
N.D.
stress
Paraquat dichloride 0.01 mg/ml
+0.5
N.D.
-0.6
N.D.
N.D.
stress
Sisomicin 0.001 mg/ml
+0.5
N.D.
-0.4
N.D.
N.D.
lb
LB
+0.5
N.D.
-0.4
N.D.
N.D.
pH
LB, pH5
-0.1
N.D.
+0.8
N.D.
N.D.
carbon source
succinate (C)
+0.0
N.D.
+1.0
N.D.
N.D.
pH
LB, pH10
+0.3
N.D.
+0.8
N.D.
N.D.
nitrogen source
L-tyrosine (N)
+0.0
N.D.
+1.4
N.D.
N.D.
stress
D-Cycloserine 0.05 mg/ml
+0.1
N.D.
+1.4
N.D.
N.D.
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