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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_2371 and Ac3H11_2372 overlap by 4 nucleotides
Ac3H11_2372 and Ac3H11_2373 are separated by 205 nucleotides
Ac3H11_2373 and Ac3H11_2374 overlap by 4 nucleotides
Ac3H11_2374 and Ac3H11_2375 are separated by 11 nucleotides
Ac3H11_2371 - CheY-like response regulator domain, at 633,888 to 634,286
_2371
Ac3H11_2372 - Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-), at 634,283 to 636,163
_2372
Ac3H11_2373 - hypothetical protein, at 636,369 to 636,752
_2373
Ac3H11_2374 - 4-oxalocrotonate tautomerase (EC 5.3.2.-), at 636,749 to 636,967
_2374
Ac3H11_2375 - Glutathione S-transferase (EC 2.5.1.18), at 636,979 to 637,596
_2375
Group
Condition
Ac3H11
_2371
Ac3H11
_2372
Ac3H11
_2373
Ac3H11
_2374
Ac3H11
_2375
stress
syringaldehyde 2.5 mM
-0.9
-0.7
-0.1
N.D.
+0.0
phage
phage 93.2
-0.9
-0.4
+0.0
N.D.
-0.3
nitrogen source
L-Leucine (N)
-0.8
-0.4
-0.3
N.D.
+0.0
stress
Cobalt chloride 0.32 mM
-0.7
-0.9
-0.1
N.D.
+0.3
stress
Cobalt chloride 0.32 mM
-0.7
-0.4
-0.3
N.D.
+0.1
stress
Bacitracin 0.008 mg/ml
-1.2
-0.2
-0.0
N.D.
+0.2
nitrogen source
L-Alanine (N)
-1.4
-0.1
+0.2
N.D.
+0.1
temperature
LB 23C
-0.9
-0.3
+0.0
N.D.
+0.0
stress
A22 0.025 mg/ml
-1.2
-0.2
+0.2
N.D.
+0.1
stress
Bacitracin 0.016 mg/ml
-0.7
-0.3
-0.3
N.D.
+0.1
stress
Cobalt chloride 0.16 mM
-0.2
-0.8
-0.3
N.D.
+0.3
lb
LB
-0.0
-0.9
-0.2
N.D.
+0.1
nitrogen source
L-Histidine (N)
-0.5
-0.5
+0.1
N.D.
+0.0
stress
copper (II) chloride 1 mM
-0.7
-0.4
-0.0
N.D.
+0.2
motility
inner cut, R2A soft agar motility assay
-0.6
+0.2
-0.5
N.D.
-0.0
motility
inner cut, R2A soft agar motility assay
-0.7
-0.3
+0.1
N.D.
+0.0
lb
LB
-0.8
-0.2
+0.1
N.D.
+0.0
stress
perchlorate 10 mM
-0.8
-0.3
+0.1
N.D.
+0.1
stress
nitrite 10 mM
-0.5
-0.3
-0.2
N.D.
+0.2
stress
Bacitracin 0.032 mg/ml
-0.5
+0.1
-0.3
N.D.
+0.0
stress
Nickel (II) chloride 0.6 mM
-0.7
-0.3
-0.0
N.D.
+0.3
stress
Cobalt chloride 0.32 mM
-0.5
-0.4
+0.1
N.D.
+0.1
nitrogen source
L-Proline (N)
-0.7
-0.2
+0.2
N.D.
+0.0
lb
LB
-0.1
-0.7
-0.0
N.D.
+0.3
pH
LB, pH5
-0.6
-0.2
+0.3
N.D.
+0.1
carbon source
L-Arabinose (C)
-0.3
-0.4
+0.3
N.D.
+0.1
carbon source
a-Ketoglutaric (C)
+0.3
+0.2
-0.5
N.D.
-0.0
stress
Cisplatin 0.005 mg/ml
-0.4
+0.2
+0.4
N.D.
+0.1
stress
copper (II) chloride 2 mM
+0.4
+0.2
-0.3
N.D.
+0.2
stress
D-Cycloserine 0.05 mg/ml
+0.7
+0.3
-0.2
N.D.
-0.2
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