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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_2349 and Ac3H11_2350 are separated by 53 nucleotides
Ac3H11_2350 and Ac3H11_2351 are separated by 187 nucleotides
Ac3H11_2351 and Ac3H11_2352 are separated by 15 nucleotides
Ac3H11_2352 and Ac3H11_2353 are separated by 130 nucleotides
Ac3H11_2349 - Transcriptional regulator, MarR family, at 605,116 to 605,643
_2349
Ac3H11_2350 - Outer membrane component of tripartite multidrug resistance system, at 605,697 to 607,172
_2350
Ac3H11_2351 - Membrane fusion component of tripartite multidrug resistance system, at 607,360 to 608,682
_2351
Ac3H11_2352 - Inner membrane component of tripartite multidrug resistance system, at 608,698 to 610,332
_2352
Ac3H11_2353 - hypothetical protein, at 610,463 to 611,035
_2353
Group
Condition
Ac3H11
_2349
Ac3H11
_2350
Ac3H11
_2351
Ac3H11
_2352
Ac3H11
_2353
stress
D-Cycloserine 0.05 mg/ml
-0.8
-0.2
-0.3
-0.3
-1.2
motility
inner cut, R2A soft agar motility assay
-0.3
-0.2
-0.1
+0.0
-1.4
carbon source
succinate (C)
-0.2
-0.4
-0.5
-0.2
-0.5
stress
Cephalothin 0.025 mg/ml
-0.3
-0.2
+0.1
-0.5
-0.9
stress
copper (II) chloride 2 mM
+0.4
-0.2
-0.8
-0.5
-0.4
stress
Bacitracin 0.032 mg/ml
-0.1
+0.1
-0.6
+0.1
-0.9
stress
Ceftazidime 0.01 mg/ml
-0.2
-0.2
-0.3
-0.1
-0.6
nitrogen source
L-Alanine (N)
+0.3
-0.2
+0.8
-0.0
-1.8
carbon source
propionate (C)
+0.1
-0.1
-0.4
+0.1
-0.6
phage
phage 93.1
+0.1
+0.1
+0.1
-0.7
-0.6
lb
LB
+0.2
-0.1
+0.2
-0.5
-0.7
stress
Cisplatin 0.005 mg/ml
+0.1
+0.3
-0.2
-0.2
-0.8
nitrogen source
L-Histidine (N)
-1.0
+0.0
+0.2
+0.1
+0.1
stress
Fusidic 0.001 mg/ml
-0.1
+0.3
-0.1
+0.2
-0.9
carbon source
pyruvate (C)
+0.1
+0.1
+0.0
+0.2
-0.9
stress
Cephalothin 0.01 mg/ml
+0.4
-0.2
+0.1
-0.1
-0.6
stress
Bacitracin 0.008 mg/ml
+0.2
+0.3
-0.5
+0.1
-0.4
carbon source
pyruvate (C)
+0.0
+0.3
-0.2
+0.3
-0.7
stress
sodium fluoride 35 mM
+0.4
-0.2
-0.3
+0.1
-0.3
phage
phage 93.1
+0.4
-0.3
+0.3
-0.2
-0.5
motility
inner cut, R2A soft agar motility assay
-0.6
+0.0
-0.9
+0.8
+0.4
pH
LB, pH10
+0.5
+0.2
+0.6
-0.6
-0.8
nitrogen source
Ammonium chloride (N)
-0.1
-0.1
+0.3
+0.5
-0.6
stress
Polymyxin B sulfate 0.0001 mg/ml
+0.3
-0.2
+0.3
+0.2
-0.4
stress
Cobalt chloride 0.32 mM
-0.3
+0.2
+0.1
+0.5
-0.3
pH
LB, pH10
+0.2
-0.0
+0.6
-0.6
+0.4
stress
Chlorate 20 mM
+0.3
-0.1
+0.4
-0.3
+0.4
stress
syringaldehyde 2.5 mM
+0.5
+0.2
+0.3
+0.4
-0.2
stress
Tetracycline 0.0001 mg/ml
+1.1
+0.0
+0.2
+0.1
+0.1
nitrogen source
D-Alanine (N)
+1.2
+0.2
+0.1
+0.3
+0.4
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