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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_2347 and Ac3H11_2348 are separated by 6 nucleotides
Ac3H11_2348 and Ac3H11_2349 are separated by 215 nucleotides
Ac3H11_2349 and Ac3H11_2350 are separated by 53 nucleotides
Ac3H11_2350 and Ac3H11_2351 are separated by 187 nucleotides
Ac3H11_2347 - hypothetical protein, at 603,905 to 604,246
_2347
Ac3H11_2348 - hypothetical protein, at 604,253 to 604,900
_2348
Ac3H11_2349 - Transcriptional regulator, MarR family, at 605,116 to 605,643
_2349
Ac3H11_2350 - Outer membrane component of tripartite multidrug resistance system, at 605,697 to 607,172
_2350
Ac3H11_2351 - Membrane fusion component of tripartite multidrug resistance system, at 607,360 to 608,682
_2351
Group
Condition
Ac3H11
_2347
Ac3H11
_2348
Ac3H11
_2349
Ac3H11
_2350
Ac3H11
_2351
stress
D-Cycloserine 0.05 mg/ml
N.D.
-0.5
-0.8
-0.2
-0.3
carbon source
succinate (C)
N.D.
-0.5
-0.2
-0.4
-0.5
stress
Chlorite 0.1 mM
N.D.
-1.2
-0.2
+0.1
+0.0
nitrogen source
L-Histidine (N)
N.D.
-0.2
-1.0
+0.0
+0.2
stress
Aluminum chloride 2 mM
N.D.
-0.2
-0.1
-0.0
-0.7
stress
nitrate 100 mM
N.D.
-0.7
+0.1
-0.3
+0.1
stress
Cisplatin 0.0025 mg/ml
N.D.
-0.2
+0.1
-0.6
-0.1
carbon source
L-Lactate (C)
N.D.
+0.2
-0.3
-0.3
-0.3
motility
inner cut, R2A soft agar motility assay
N.D.
+0.8
-0.6
+0.0
-0.9
stress
copper (II) chloride 2 mM
N.D.
-0.1
+0.4
-0.2
-0.8
stress
Bacitracin 0.008 mg/ml
N.D.
-0.4
+0.2
+0.3
-0.5
stress
Cobalt chloride 0.16 mM
N.D.
-0.4
-0.3
+0.1
+0.3
carbon source
pyruvate (C)
N.D.
-0.4
+0.0
+0.3
-0.2
lb
LB
N.D.
-0.5
-0.0
+0.0
+0.3
stress
sodium fluoride 35 mM
N.D.
-0.1
+0.4
-0.2
-0.3
stress
Polymyxin B sulfate 0.0001 mg/ml
N.D.
-0.2
+0.3
-0.2
+0.3
stress
Cobalt chloride 0.4 mM
N.D.
+0.2
-0.4
-0.0
+0.4
stress
Zinc 1 mM
N.D.
-0.4
+0.6
+0.2
-0.2
pH
LB, pH10
N.D.
-0.2
+0.2
-0.0
+0.6
stress
nitrate 20 mM
N.D.
+0.5
+0.4
-0.1
-0.2
phage
phage 93.1
N.D.
+0.1
+0.4
-0.3
+0.3
carbon source
D-Galactose (C)
N.D.
+0.2
+0.6
-0.2
-0.1
nitrogen source
L-Alanine (N)
N.D.
-0.1
+0.3
-0.2
+0.8
stress
Tetracycline 0.00005 mg/ml
N.D.
+0.7
+0.1
+0.1
+0.0
nitrogen source
Uridine (N)
N.D.
+0.4
+0.5
+0.2
-0.1
stress
syringaldehyde 2.5 mM
N.D.
+0.2
+0.5
+0.2
+0.3
nitrogen source
Ammonium chloride (N)
N.D.
+1.1
-0.1
-0.1
+0.3
stress
Tetracycline 0.0001 mg/ml
N.D.
+0.3
+1.1
+0.0
+0.2
nitrogen source
D-Alanine (N)
N.D.
+0.1
+1.2
+0.2
+0.1
pH
LB, pH10
N.D.
+0.4
+0.5
+0.2
+0.6
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Ac3H11_2349
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