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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_2335 and Ac3H11_2336 are separated by 94 nucleotides
Ac3H11_2336 and Ac3H11_2337 are separated by 85 nucleotides
Ac3H11_2337 and Ac3H11_2338 are separated by 348 nucleotides
Ac3H11_2338 and Ac3H11_2339 are separated by 47 nucleotides
Ac3H11_2335 - hypothetical protein, at 591,104 to 591,415
_2335
Ac3H11_2336 - Tricarboxylate transport protein TctC, at 591,510 to 592,505
_2336
Ac3H11_2337 - hypothetical protein, not 6-phosphogluconolactonase, at 592,591 to 593,766
_2337
Ac3H11_2338 - Tricarboxylate transport protein TctC, at 594,115 to 595,086
_2338
Ac3H11_2339 - 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41), at 595,134 to 596,045
_2339
Group
Condition
Ac3H11
_2335
Ac3H11
_2336
Ac3H11
_2337
Ac3H11
_2338
Ac3H11
_2339
lb
LB
-0.5
-0.0
-0.0
-0.2
-0.4
nitrogen source
D-Alanine (N)
-0.1
-0.5
-0.1
-0.0
-0.5
carbon source
succinate (C)
-0.2
-0.2
-0.4
-0.3
+0.0
stress
D-Cycloserine 0.05 mg/ml
-0.3
+0.2
-0.0
-0.0
-0.8
stress
A22 0.025 mg/ml
-0.3
-0.2
-0.1
-0.1
-0.3
lb
LB
-0.2
+0.0
-0.3
-0.3
-0.2
stress
5-Hydroxymethylfurfural 5 mM
-0.2
-0.3
-0.0
-0.1
-0.4
stress
sodium fluoride 35 mM
-0.4
-0.1
-0.1
-0.2
-0.1
motility
inner cut, R2A soft agar motility assay
-0.2
-0.0
-0.3
+0.1
-0.3
stress
nitrate 100 mM
+0.2
+0.0
-0.2
-0.2
-0.5
stress
Thallium(I) acetate 0.0006 mg/ml
-0.1
-0.1
-0.0
-0.5
+0.2
stress
nitrate 45 mM
-0.1
+0.2
-0.1
-0.2
-0.2
pH
LB, pH10
-0.5
+0.0
+0.2
-0.1
+0.1
stress
Bacitracin 0.008 mg/ml
-0.1
-0.2
-0.2
-0.1
+0.5
motility
inner cut, R2A soft agar motility assay
+0.3
-0.2
+0.0
+0.2
-0.4
motility
inner cut, R2A soft agar motility assay
-0.4
-0.2
+0.3
+0.2
+0.0
stress
nitrite 10 mM
-0.3
-0.0
-0.1
-0.1
+0.5
stress
Fusidic 0.001 mg/ml
-0.2
+0.1
-0.1
+0.0
+0.4
stress
Sisomicin 0.001 mg/ml
-0.4
+0.0
+0.1
-0.0
+0.5
nitrogen source
L-tyrosine (N)
+0.2
+0.2
+0.2
-0.2
-0.1
pH
LB, pH10
+0.0
-0.2
-0.3
+0.1
+0.6
stress
perchlorate 10 mM
+0.0
+0.1
-0.1
-0.2
+0.4
stress
Phosphomycin 0.02 mg/ml
-0.2
-0.3
+0.2
+0.2
+0.5
stress
Cobalt chloride 0.32 mM
+0.2
-0.1
-0.1
+0.2
+0.3
carbon source
D-Mannose (C)
-0.2
-0.1
+0.1
+0.3
+0.2
stress
copper (II) chloride 2 mM
+0.3
-0.2
+0.0
+0.2
+0.2
carbon source
pyruvate (C)
+0.2
-0.2
+0.1
+0.1
+0.5
stress
Zinc 1 mM
+0.4
+0.0
+0.1
-0.2
+0.5
stress
Cisplatin 0.005 mg/ml
+0.5
+0.0
+0.0
-0.2
+0.8
nitrogen source
L-Alanine (N)
+0.2
+0.1
+0.3
-0.2
+0.8
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