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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_2330 and Ac3H11_2331 are separated by 99 nucleotides
Ac3H11_2331 and Ac3H11_2332 are separated by 92 nucleotides
Ac3H11_2332 and Ac3H11_2333 are separated by 116 nucleotides
Ac3H11_2333 and Ac3H11_2334 are separated by 179 nucleotides
Ac3H11_2330 - hypothetical protein, at 586,056 to 586,397
_2330
Ac3H11_2331 - Peroxide stress regulator; Ferric uptake regulation protein; Fe2+/Zn2+ uptake regulation proteins, at 586,497 to 586,874
_2331
Ac3H11_2332 - hypothetical protein, at 586,967 to 587,311
_2332
Ac3H11_2333 - hypothetical protein, at 587,428 to 588,696
_2333
Ac3H11_2334 - Sel1-like repeat, at 588,876 to 590,873
_2334
Group
Condition
Ac3H11
_2330
Ac3H11
_2331
Ac3H11
_2332
Ac3H11
_2333
Ac3H11
_2334
carbon source
propionate (C)
+0.0
-2.1
N.D.
-0.0
-0.2
stress
copper (II) chloride 1 mM
-0.1
-1.0
N.D.
-0.1
-0.0
stress
Cobalt chloride 0.32 mM
+0.2
-1.0
N.D.
+0.0
-0.2
stress
Cisplatin 0.005 mg/ml
+0.4
-1.4
N.D.
-0.3
+0.3
stress
Cobalt chloride 0.4 mM
-0.3
-0.8
N.D.
+0.1
+0.0
nitrogen source
D-Alanine (N)
-0.8
-0.7
N.D.
+0.4
+0.1
stress
A22 0.025 mg/ml
-0.2
-0.8
N.D.
+0.1
+0.1
stress
Cisplatin 0.0025 mg/ml
-0.3
-0.7
N.D.
+0.1
+0.1
motility
inner cut, R2A soft agar motility assay
-0.4
-0.5
N.D.
+0.2
-0.1
pH
LB, pH10
-0.3
-0.6
N.D.
+0.2
-0.0
stress
Thallium(I) acetate 0.0006 mg/ml
-0.3
-0.5
N.D.
+0.2
-0.2
nitrogen source
L-Histidine (N)
-0.1
-0.8
N.D.
+0.2
+0.0
stress
Polymyxin B sulfate 0.0001 mg/ml
-0.4
+0.2
N.D.
-0.1
-0.2
stress
Fusidic 0.001 mg/ml
-0.1
-0.6
N.D.
+0.2
+0.1
stress
D-Cycloserine 0.05 mg/ml
-0.2
+0.4
N.D.
-0.3
-0.3
nitrogen source
L-Threonine (N)
-0.5
-0.1
N.D.
+0.4
-0.0
stress
copper (II) chloride 2 mM
-0.2
+0.5
N.D.
-0.1
-0.2
carbon source
succinate (C)
+0.3
+0.4
N.D.
-0.1
-0.2
stress
Phosphomycin 0.02 mg/ml
-0.3
+0.7
N.D.
+0.1
-0.1
stress
Phosphomycin 0.06 mg/ml
-0.4
+1.0
N.D.
+0.1
-0.3
lb
LB
-0.2
+0.7
N.D.
+0.1
-0.1
stress
perchlorate 25 mM
-0.2
+1.1
N.D.
-0.1
-0.1
carbon source
a-Ketoglutaric (C)
+0.2
+0.6
N.D.
+0.0
-0.2
stress
Cephalothin 0.005 mg/ml
-0.1
+1.0
N.D.
-0.0
-0.1
pH
LB, pH10
-0.1
+0.6
N.D.
+0.5
-0.2
lb
LB
-0.0
+1.0
N.D.
+0.1
-0.2
nitrogen source
Ammonium chloride (N)
+0.3
+0.1
N.D.
+0.5
-0.1
stress
Paraquat dichloride 0.01 mg/ml
+0.2
+0.8
N.D.
-0.1
+0.1
phage
phage 93.1
+0.5
+0.4
N.D.
-0.0
+0.3
stress
Sisomicin 0.001 mg/ml
-0.0
+1.2
N.D.
-0.0
+0.4
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