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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_231 and Ac3H11_232 are separated by 258 nucleotides
Ac3H11_232 and Ac3H11_233 are separated by 183 nucleotides
Ac3H11_233 and Ac3H11_234 are separated by 286 nucleotides
Ac3H11_234 and Ac3H11_235 are separated by 451 nucleotides
Ac3H11_231 - TonB-dependent hemin , ferrichrome receptor, at 44,166 to 46,454
_231
Ac3H11_232 - Alkyl hydroperoxide reductase protein F (EC 1.6.4.-), at 46,713 to 48,290
_232
Ac3H11_233 - Alkyl hydroperoxide reductase protein C (EC 1.6.4.-), at 48,474 to 49,049
_233
Ac3H11_234 - Bacterioferritin, at 49,336 to 49,812
_234
Ac3H11_235 - FIG024006: iron uptake protein, at 50,264 to 50,572
_235
Group
Condition
Ac3H11
_231
Ac3H11
_232
Ac3H11
_233
Ac3H11
_234
Ac3H11
_235
stress
Bacitracin 0.032 mg/ml
-0.3
-2.4
N.D.
-0.2
+0.4
lb
LB
-0.0
-2.2
N.D.
-0.3
+0.0
carbon source
D-Gluconic Acid (C)
-0.1
-1.3
N.D.
-0.8
-0.2
lb
LB
-0.1
-2.4
N.D.
+0.4
-0.2
stress
Paraquat dichloride 0.01 mg/ml
-0.2
-1.8
N.D.
-0.6
+0.4
carbon source
L-Lactate (C)
-0.0
-2.2
N.D.
+0.2
-0.1
stress
perchlorate 25 mM
-0.2
-2.0
N.D.
+0.5
-0.2
stress
nitrate 100 mM
+0.3
-1.7
N.D.
-0.5
+0.0
motility
inner cut, R2A soft agar motility assay
-0.1
-1.2
N.D.
+0.1
-0.5
stress
Cisplatin 0.0025 mg/ml
+0.1
-1.8
N.D.
-0.4
+0.4
stress
nitrite 10 mM
-0.1
-1.9
N.D.
+0.1
+0.2
lb
LB
-0.2
-1.6
N.D.
+0.1
+0.0
stress
sodium fluoride 25 mM
+0.0
-1.9
N.D.
+0.2
+0.1
stress
Cephalothin 0.01 mg/ml
+0.2
-1.6
N.D.
-0.3
+0.2
stress
Cisplatin 0.005 mg/ml
-0.2
-0.9
N.D.
-0.6
+0.4
motility
inner cut, R2A soft agar motility assay
-0.3
-0.8
N.D.
+0.7
-0.9
carbon source
D-Gluconic Acid (C)
+0.0
-1.5
N.D.
+0.2
-0.0
stress
Chlorite 0.1 mM
+0.2
-0.5
N.D.
-1.3
+0.3
stress
Ceftazidime 0.01 mg/ml
+0.3
-1.4
N.D.
-0.0
-0.0
stress
sodium fluoride 35 mM
+0.2
-1.4
N.D.
-0.0
+0.1
stress
Nickel (II) chloride 0.8 mM
+0.3
-1.4
N.D.
-0.4
+0.4
stress
Cephalothin 0.005 mg/ml
+0.1
-1.2
N.D.
+0.4
-0.3
pH
LB, pH10
+0.1
+0.5
N.D.
-0.8
-0.7
stress
2-Furfuraldehyde 0.06 vol%
+0.2
-1.2
N.D.
+0.3
-0.1
lb
LB
+0.1
-1.3
N.D.
+0.1
+0.2
stress
nitrate 20 mM
+0.1
-0.8
N.D.
-0.5
+0.4
stress
Cobalt chloride 0.16 mM
+0.2
-1.3
N.D.
+0.4
+0.1
carbon source
D-Lactate (C)
+0.2
-0.6
N.D.
+0.5
-0.4
phage
phage 93.2
-0.1
+1.2
N.D.
-1.4
+0.0
pH
LB, pH10
-0.4
+1.5
N.D.
-0.9
-0.1
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