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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_2291 and Ac3H11_2292 are separated by 138 nucleotides
Ac3H11_2292 and Ac3H11_2293 overlap by 4 nucleotides
Ac3H11_2293 and Ac3H11_2294 are separated by 56 nucleotides
Ac3H11_2294 and Ac3H11_2295 are separated by 253 nucleotides
Ac3H11_2291 - FIG00911518: hypothetical protein, at 530,340 to 531,425
_2291
Ac3H11_2292 - Intracellular PHB depolymerase (EC 3.1.1.-), at 531,564 to 533,186
_2292
Ac3H11_2293 - Electron transport complex protein RnfB, at 533,183 to 533,866
_2293
Ac3H11_2294 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 533,923 to 535,326
_2294
Ac3H11_2295 - N-succinyl-L,L-diaminopimelate aminotransferase alternative (EC 2.6.1.17), at 535,580 to 536,785
_2295
Group
Condition
Ac3H11
_2291
Ac3H11
_2292
Ac3H11
_2293
Ac3H11
_2294
Ac3H11
_2295
carbon source
D-Glucose (C)
-0.1
-0.6
-0.5
-0.1
-0.1
carbon source
D-Glucose (C)
-0.2
-0.7
-0.5
+0.1
-0.1
stress
Cobalt chloride 0.32 mM
-0.1
-0.1
-0.6
-0.1
-0.1
stress
D-Cycloserine 0.05 mg/ml
-0.4
-0.1
-0.3
+0.0
-0.2
carbon source
L-Arabinose (C)
+0.0
-0.6
-0.3
+0.0
-0.1
stress
Cisplatin 0.0025 mg/ml
-0.3
+0.0
-0.4
-0.2
-0.1
carbon source
succinate (C)
-0.2
-0.2
-0.4
-0.2
-0.0
carbon source
succinate (C)
+0.1
-0.3
-0.5
-0.1
-0.1
nitrogen source
L-Isoleucine (N)
+0.1
-0.3
-0.6
+0.1
-0.1
carbon source
D-Galactose (C)
-0.0
-0.4
-0.5
+0.0
+0.0
carbon source
L-Arabinose (C)
-0.0
-0.6
-0.2
-0.1
+0.1
carbon source
D-Fructose (C)
-0.1
-0.2
-0.4
+0.1
-0.1
stress
Tetracycline 0.0001 mg/ml
-0.5
-0.2
-0.1
-0.1
+0.1
carbon source
L-Arabinose (C)
+0.1
-0.7
-0.0
-0.1
+0.0
carbon source
Tween 20 (C)
+0.2
-0.3
-0.1
-0.0
-0.4
nitrogen source
Ammonium chloride (N)
+0.5
-1.0
-0.1
-0.1
+0.0
stress
Zinc 1 mM
-0.0
+0.3
-0.5
-0.0
-0.3
carbon source
L-Asparagine (C)
+0.2
-0.0
-0.3
-0.1
-0.3
carbon source
D-Mannose (C)
+0.2
-0.4
-0.3
+0.0
-0.0
nitrogen source
Uridine (N)
+0.2
-0.4
-0.1
+0.1
+0.2
motility
inner cut, R2A soft agar motility assay
-0.2
+0.2
-0.1
+0.3
-0.2
stress
copper (II) chloride 2 mM
-0.6
+0.2
+0.1
+0.2
+0.2
nitrogen source
L-Alanine (N)
+0.2
-0.6
+0.2
+0.1
+0.2
nitrogen source
D-Alanine (N)
+0.3
-0.3
+0.2
-0.0
+0.2
stress
perchlorate 10 mM
+0.2
+0.1
+0.4
-0.0
-0.1
stress
Dimethyl Sulfoxide 6 vol%
+0.6
-0.1
-0.1
+0.1
+0.0
stress
Nickel (II) chloride 0.8 mM
-0.1
-0.1
+0.0
+0.0
+0.8
stress
Cobalt chloride 0.32 mM
+0.5
+0.1
+0.3
-0.0
+0.0
pH
LB, pH10
-0.1
+0.4
+0.4
-0.1
+0.3
pH
LB, pH10
+0.0
+0.4
+0.8
+0.0
+0.1
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