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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_2284 and Ac3H11_2285 are separated by 138 nucleotides
Ac3H11_2285 and Ac3H11_2286 are separated by 70 nucleotides
Ac3H11_2286 and Ac3H11_2287 are separated by 198 nucleotides
Ac3H11_2287 and Ac3H11_2288 are separated by 255 nucleotides
Ac3H11_2284 - putative dehydrogenase, at 521,465 to 522,574
_2284
Ac3H11_2285 - Transcriptional regulator, AsnC family, at 522,713 to 523,201
_2285
Ac3H11_2286 - acyltransferase family protein, at 523,272 to 523,859
_2286
Ac3H11_2287 - HD-GYP domain, at 524,058 to 525,449
_2287
Ac3H11_2288 - tRNA dihydrouridine synthase A, at 525,705 to 526,721
_2288
Group
Condition
Ac3H11
_2284
Ac3H11
_2285
Ac3H11
_2286
Ac3H11
_2287
Ac3H11
_2288
nitrogen source
L-Alanine (N)
-0.0
-5.0
-0.5
-0.1
-0.1
carbon source
succinate (C)
+0.1
-2.3
+0.1
-0.0
-0.3
stress
Cisplatin 0.005 mg/ml
+0.4
-2.1
-0.4
+0.1
-0.1
stress
Nickel (II) chloride 0.6 mM
-0.3
-1.2
-0.1
-0.0
-0.2
carbon source
D-Lactate (C)
+0.1
-1.8
+0.0
+0.2
-0.4
stress
Cobalt chloride 0.32 mM
+0.0
-1.4
-0.1
-0.1
-0.2
lb
LB
+0.0
-0.5
-0.9
-0.1
-0.2
stress
Aluminum chloride 2 mM
+0.1
-1.1
-0.0
-0.3
-0.2
stress
Phosphomycin 0.06 mg/ml
+0.2
-0.8
-0.3
-0.3
-0.2
stress
copper (II) chloride 1 mM
+0.2
-1.5
-0.0
-0.1
-0.1
stress
Cobalt chloride 0.32 mM
+0.2
-1.7
-0.0
+0.1
-0.1
stress
sodium fluoride 25 mM
+0.1
-1.4
+0.0
-0.1
-0.1
stress
Doxycycline hyclate 0.000025 mg/ml
-0.3
-1.0
+0.2
-0.0
-0.2
carbon source
pyruvate (C)
+0.1
-1.0
-0.2
+0.1
-0.1
carbon source
succinate (C)
+0.1
-0.9
+0.2
-0.0
-0.4
stress
Chlorite 0.1 mM
+0.2
-0.6
+0.0
-0.1
-0.5
carbon source
Tween 20 (C)
+0.1
-1.0
-0.1
+0.0
+0.1
lb
LB
-0.1
-0.4
-0.3
+0.2
-0.3
phage
phage 93.1
-0.3
-0.4
+0.2
-0.0
-0.3
carbon source
D-Fructose (C)
+0.3
-0.8
-0.1
+0.0
+0.1
stress
Bacitracin 0.032 mg/ml
-0.3
+0.5
-0.2
+0.2
-0.5
nitrogen source
Ammonium chloride (N)
+0.1
-1.2
-0.1
+0.3
+0.6
stress
copper (II) chloride 2 mM
+0.5
-0.7
+0.1
+0.0
-0.1
carbon source
D-Gluconic Acid (C)
+0.2
+0.7
+0.1
-0.1
-0.2
stress
sodium fluoride 50 mM
+0.2
+0.7
-0.2
-0.0
+0.1
stress
Cobalt chloride 0.32 mM
+0.0
+1.2
-0.1
+0.1
-0.1
pH
LB, pH10
-0.1
+0.8
+0.6
-0.0
-0.2
stress
nitrate 100 mM
+0.2
+1.1
-0.2
+0.1
+0.3
nitrogen source
D-Alanine (N)
-0.4
+1.6
+0.2
-0.1
+0.1
motility
inner cut, R2A soft agar motility assay
-0.0
+1.5
-0.0
+0.3
+0.3
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