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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_2281 and Ac3H11_2282 are separated by 15 nucleotides
Ac3H11_2282 and Ac3H11_2283 are separated by 18 nucleotides
Ac3H11_2283 and Ac3H11_2284 are separated by 56 nucleotides
Ac3H11_2284 and Ac3H11_2285 are separated by 138 nucleotides
Ac3H11_2281 - hypothetical protein, at 518,217 to 518,648
_2281
Ac3H11_2282 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 518,664 to 520,451
_2282
Ac3H11_2283 - hypothetical protein, at 520,470 to 521,408
_2283
Ac3H11_2284 - putative dehydrogenase, at 521,465 to 522,574
_2284
Ac3H11_2285 - Transcriptional regulator, AsnC family, at 522,713 to 523,201
_2285
Group
Condition
Ac3H11
_2281
Ac3H11
_2282
Ac3H11
_2283
Ac3H11
_2284
Ac3H11
_2285
nitrogen source
L-Alanine (N)
-0.5
+0.2
+0.0
-0.0
-5.0
carbon source
succinate (C)
-0.1
-0.0
-0.1
+0.1
-2.3
stress
Cisplatin 0.005 mg/ml
-0.6
-0.1
-0.0
+0.4
-2.1
stress
Nickel (II) chloride 0.6 mM
-0.3
+0.1
-0.2
-0.3
-1.2
carbon source
D-Lactate (C)
+0.3
-0.2
-0.1
+0.1
-1.8
stress
Cobalt chloride 0.32 mM
-0.3
+0.1
-0.1
+0.0
-1.4
stress
Cobalt chloride 0.32 mM
+0.2
-0.1
-0.0
+0.2
-1.7
stress
Aluminum chloride 2 mM
+0.2
-0.3
-0.1
+0.1
-1.1
stress
copper (II) chloride 1 mM
+0.1
-0.0
+0.1
+0.2
-1.5
carbon source
D-Lactate (C)
-0.4
+0.1
-0.1
+0.1
-0.7
stress
sodium fluoride 25 mM
+0.4
-0.1
-0.0
+0.1
-1.4
stress
Doxycycline hyclate 0.000025 mg/ml
-0.1
+0.5
-0.1
-0.3
-1.0
nitrogen source
Ammonium chloride (N)
+0.1
+0.3
+0.0
+0.1
-1.2
carbon source
D-Galactose (C)
-0.4
+0.1
-0.0
+0.2
-0.6
carbon source
L-Lactate (C)
+0.3
-0.1
-0.1
+0.1
-0.8
stress
Paraquat dichloride 0.01 mg/ml
-0.4
+0.3
-0.1
+0.2
-0.5
motility
inner cut, R2A soft agar motility assay
+0.6
-0.0
-0.2
-0.1
-0.8
pH
LB, pH10
+0.5
-0.3
+0.0
-0.0
-0.5
carbon source
propionate (C)
+0.3
+0.1
+0.2
-0.0
-0.8
nitrogen source
Uridine (N)
-0.8
+0.0
+0.1
+0.2
+0.3
stress
Bacitracin 0.032 mg/ml
-0.3
+0.2
-0.1
-0.3
+0.5
stress
copper (II) chloride 2 mM
+0.3
+0.3
+0.0
+0.5
-0.7
stress
Nickel (II) chloride 0.8 mM
-0.1
+1.0
+0.0
+0.2
-0.1
carbon source
D-Gluconic Acid (C)
+0.4
-0.2
-0.0
+0.2
+0.7
stress
nitrate 100 mM
-0.4
+0.2
+0.2
+0.2
+1.1
nitrogen source
D-Alanine (N)
+0.2
-0.1
+0.0
-0.4
+1.6
carbon source
a-Ketoglutaric (C)
+0.6
+0.3
+0.2
-0.0
+0.5
stress
Cobalt chloride 0.4 mM
-0.0
+0.9
+0.1
+0.1
+0.6
motility
inner cut, R2A soft agar motility assay
-0.1
+0.2
+0.2
-0.0
+1.5
stress
Cobalt chloride 0.32 mM
+0.3
+1.2
+0.0
+0.0
+1.2
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