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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_2269 and Ac3H11_2270 overlap by 8 nucleotides
Ac3H11_2270 and Ac3H11_2271 are separated by 21 nucleotides
Ac3H11_2271 and Ac3H11_2272 are separated by 98 nucleotides
Ac3H11_2272 and Ac3H11_2273 are separated by 3 nucleotides
Ac3H11_2269 - Sensory box histidine kinase/response regulator, at 501,557 to 504,610
_2269
Ac3H11_2270 - Pole remodelling regulatory diguanylate cyclase, at 504,603 to 505,772
_2270
Ac3H11_2271 - Response regulator, at 505,794 to 506,711
_2271
Ac3H11_2272 - Biotin synthase (EC 2.8.1.6), at 506,810 to 507,886
_2272
Ac3H11_2273 - hypothetical protein, at 507,890 to 508,162
_2273
Group
Condition
Ac3H11
_2269
Ac3H11
_2270
Ac3H11
_2271
Ac3H11
_2272
Ac3H11
_2273
nitrogen source
L-Leucine (N)
+0.1
-0.1
-0.1
-3.7
-1.7
carbon source
succinate (C)
+0.2
-0.2
+0.4
-3.0
-1.7
carbon source
succinate (C)
+0.2
-0.1
+0.2
-2.8
-0.9
nitrogen source
L-Histidine (N)
+0.1
-0.2
+0.2
-2.1
-1.2
carbon source
D-Lactate (C)
+0.1
-0.1
+0.0
-2.2
-1.1
carbon source
pyruvate (C)
-0.0
+0.2
+0.2
-2.4
-0.7
carbon source
L-Lactate (C)
+0.1
-0.1
+0.2
-1.9
-1.0
carbon source
L-Malic (C)
+0.0
+0.1
-0.1
-1.6
-1.0
carbon source
D-Gluconic Acid (C)
+0.0
+0.1
+0.0
-1.9
-0.7
carbon source
L-Asparagine (C)
-0.1
-0.1
-0.2
-1.0
-0.9
nitrogen source
L-Proline (N)
+0.0
-0.2
+0.0
-1.2
-1.1
carbon source
pyruvate (C)
+0.0
+0.0
+0.4
-2.1
-0.7
carbon source
succinate (C)
+0.2
-0.1
+0.1
-0.8
-1.6
carbon source
L-Lactate (C)
+0.1
+0.1
-0.0
-1.5
-0.9
carbon source
D-Gluconic Acid (C)
-0.1
+0.1
+0.0
-1.5
-0.5
carbon source
D,L-Lactate (C)
+0.2
-0.1
+0.1
-1.3
-0.8
carbon source
D-Lactate (C)
+0.3
+0.0
-0.0
-1.6
-0.7
nitrogen source
L-Glutamine (N)
-0.0
-0.0
+0.0
-1.2
-0.7
carbon source
D,L-Lactate (C)
+0.1
+0.1
+0.3
-1.6
-0.7
nitrogen source
L-tyrosine (N)
-0.3
-0.0
+0.2
-1.2
-0.5
carbon source
a-Ketoglutaric (C)
-0.1
-0.2
-0.2
-0.4
-0.9
pH
LB, pH10
-0.2
-0.0
-0.5
-0.4
-0.6
carbon source
D-Glucose (C)
+0.0
+0.0
+0.1
-1.0
-0.8
nitrogen source
L-Alanine (N)
-0.0
+0.1
-0.2
-0.0
-1.4
carbon source
D-Glucose (C)
-0.0
+0.0
+0.2
-0.9
-0.4
carbon source
L-Glutamine (C)
+0.1
+0.1
+0.1
-0.5
-0.7
lb
LB
+0.2
+0.3
+0.3
-0.1
-1.3
stress
Polymyxin B sulfate 0.0001 mg/ml
+0.8
-0.2
+0.1
-0.3
+0.2
stress
copper (II) chloride 2 mM
+0.1
-0.1
+0.4
+0.0
+0.9
motility
inner cut, R2A soft agar motility assay
+0.6
-0.1
-0.1
+0.3
+1.0
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