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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_2253 and Ac3H11_2254 overlap by 11 nucleotides
Ac3H11_2254 and Ac3H11_2255 are separated by 41 nucleotides
Ac3H11_2255 and Ac3H11_2256 overlap by 4 nucleotides
Ac3H11_2256 and Ac3H11_2257 are separated by 67 nucleotides
Ac3H11_2253 - Transcriptional regulator, MarR family, at 487,768 to 488,268
_2253
Ac3H11_2254 - Transmembrane transport protein, at 488,258 to 489,520
_2254
Ac3H11_2255 - Acyl dehydratase, at 489,562 to 490,089
_2255
Ac3H11_2256 - Na+ driven multidrug efflux pump, at 490,086 to 491,507
_2256
Ac3H11_2257 - Short-chain dehydrogenase/reductase SDR, at 491,575 to 492,378
_2257
Group
Condition
Ac3H11
_2253
Ac3H11
_2254
Ac3H11
_2255
Ac3H11
_2256
Ac3H11
_2257
nitrogen source
L-Alanine (N)
-1.4
-0.3
-1.1
+0.2
-0.0
stress
Cisplatin 0.005 mg/ml
-2.0
-0.1
-0.2
-0.1
-0.2
carbon source
D-Glucose (C)
-1.8
-0.0
-0.1
-0.0
-0.2
lb
LB
-1.8
-0.1
-0.1
+0.0
+0.1
nitrogen source
D-Alanine (N)
-2.2
+0.5
+0.1
+0.1
-0.4
carbon source
D,L-Lactate (C)
-2.1
+0.2
-0.0
+0.1
+0.1
carbon source
D-Lactate (C)
-0.7
-0.1
-0.5
-0.0
-0.0
stress
Bacitracin 0.008 mg/ml
-1.2
-0.2
+0.1
+0.3
+0.0
stress
Zinc 1 mM
-1.2
+0.1
+0.3
+0.0
-0.2
nitrogen source
L-Arginine (N)
-1.2
+0.1
-0.2
+0.1
+0.1
carbon source
D-Galactose (C)
-1.4
+0.1
+0.2
-0.0
+0.1
stress
Chlorite 0.1 mM
-0.7
-0.1
-0.3
+0.2
+0.1
carbon source
succinate (C)
-1.1
-0.0
+0.5
+0.0
+0.1
stress
Sisomicin 0.001 mg/ml
-1.1
-0.1
+0.7
+0.2
-0.2
lb
LB
-0.9
+0.0
+0.4
+0.1
+0.1
carbon source
D-Mannose (C)
-0.7
+0.1
+0.4
+0.2
-0.0
nitrogen source
L-Isoleucine (N)
-0.7
+0.0
+0.3
+0.2
+0.1
stress
Cisplatin 0.0025 mg/ml
-0.7
+0.1
+0.4
+0.2
+0.1
motility
inner cut, R2A soft agar motility assay
-1.6
-0.2
+1.5
+0.1
+0.3
motility
inner cut, R2A soft agar motility assay
-0.4
-0.2
+0.7
-0.1
+0.3
motility
inner cut, R2A soft agar motility assay
+1.3
-0.1
-0.3
+0.1
-0.3
stress
sodium fluoride 20 mM
+0.4
-0.2
+0.5
+0.1
+0.2
stress
Cobalt chloride 0.32 mM
+0.5
+0.2
+0.3
+0.1
+0.2
stress
Chlorate 20 mM
+0.4
+0.3
+0.6
+0.0
-0.0
lb
LB
+0.6
+0.0
+0.5
+0.1
+0.2
stress
perchlorate 10 mM
+0.7
+0.1
+0.2
+0.2
+0.3
stress
Cobalt chloride 0.4 mM
+1.3
-0.2
+0.1
+0.1
+0.2
nitrogen source
Uridine (N)
+0.7
+0.1
+0.3
+0.2
+0.1
pH
LB, pH9
+0.5
+0.1
+1.0
-0.0
+0.0
stress
D-Cycloserine 0.05 mg/ml
+1.0
+0.1
+0.8
+0.4
-0.1
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