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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_2230 and Ac3H11_2231 are separated by 19 nucleotides
Ac3H11_2231 and Ac3H11_2232 are separated by 169 nucleotides
Ac3H11_2232 and Ac3H11_2233 are separated by 320 nucleotides
Ac3H11_2233 and Ac3H11_2234 are separated by 214 nucleotides
Ac3H11_2230 - FIG00931343: hypothetical protein, at 466,029 to 466,727
_2230
Ac3H11_2231 - hypothetical protein, at 466,747 to 467,184
_2231
Ac3H11_2232 - Zinc-regulated outer membrane receptor, at 467,354 to 469,567
_2232
Ac3H11_2233 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 469,888 to 471,510
_2233
Ac3H11_2234 - Probable mdcF malonate transporter, at 471,725 to 472,678
_2234
Group
Condition
Ac3H11
_2230
Ac3H11
_2231
Ac3H11
_2232
Ac3H11
_2233
Ac3H11
_2234
pH
LB, pH10
-0.9
-1.3
+0.2
-0.6
-0.7
stress
copper (II) chloride 2 mM
-0.9
-0.3
-0.0
+0.1
-0.3
stress
Paraquat dichloride 0.01 mg/ml
-1.5
+0.6
-0.2
+0.0
+0.1
lb
LB
-0.6
-0.6
+0.0
+0.0
+0.2
nitrogen source
L-Isoleucine (N)
-0.4
-0.3
+0.3
-0.1
-0.2
stress
Cisplatin 0.005 mg/ml
-0.4
-1.0
+0.0
+0.5
+0.2
nitrogen source
Ammonium chloride (N)
-0.1
-1.0
+0.4
+0.5
-0.1
carbon source
succinate (C)
-0.7
+0.3
+0.0
+0.2
+0.0
nitrogen source
L-Threonine (N)
+0.5
-0.9
+0.2
+0.2
-0.1
pH
LB, pH9
+0.6
-0.6
+0.1
+0.0
-0.1
stress
Cobalt chloride 0.4 mM
-0.5
+0.4
+0.1
-0.4
+0.3
carbon source
a-Ketoglutaric (C)
+0.5
-1.1
+0.2
+0.0
+0.4
stress
Phosphomycin 0.02 mg/ml
+0.4
-0.7
+0.2
+0.3
-0.1
phage
phage 93.1
+0.7
-1.0
+0.1
+0.0
+0.4
carbon source
D-Ribose (C)
+0.3
-0.5
+0.2
+0.2
+0.1
carbon source
succinate (C)
+0.2
-0.6
+0.3
+0.0
+0.4
motility
inner cut, R2A soft agar motility assay
+0.5
-0.1
+0.1
+0.3
-0.3
stress
Bacitracin 0.032 mg/ml
+0.7
+0.3
+0.1
-0.1
-0.3
nitrogen source
D-Alanine (N)
+0.5
-0.4
+0.3
+0.1
+0.2
motility
inner cut, R2A soft agar motility assay
+0.8
-0.5
+0.2
+0.1
+0.2
motility
inner cut, R2A soft agar motility assay
+0.5
-0.4
+0.1
+0.5
+0.0
lb
LB
+0.6
+0.5
+0.0
+0.1
-0.3
stress
Bacitracin 0.016 mg/ml
+0.4
-0.5
+0.3
+0.3
+0.3
stress
perchlorate 25 mM
+0.2
+0.4
+0.2
-0.2
+0.4
carbon source
D-Glucose (C)
+0.7
-0.2
+0.1
+0.1
+0.3
nitrogen source
L-Leucine (N)
+0.7
-0.3
+0.3
+0.2
+0.2
nitrogen source
L-Alanine (N)
+0.5
-0.4
+0.4
+0.1
+0.8
carbon source
a-Ketoglutaric (C)
+0.4
+0.3
+0.4
+0.1
+0.3
stress
D-Cycloserine 0.05 mg/ml
+0.4
+0.5
+0.3
+0.1
+0.5
pH
LB, pH10
+0.8
+0.7
+0.3
+0.0
+0.4
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