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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_2223 and Ac3H11_2224 are separated by 7 nucleotides
Ac3H11_2224 and Ac3H11_2225 are separated by 102 nucleotides
Ac3H11_2225 and Ac3H11_2226 are separated by 1502 nucleotides
Ac3H11_2226 and Ac3H11_2227 overlap by 4 nucleotides
Ac3H11_2223 - Probable Co/Zn/Cd efflux system membrane fusion protein, at 459,298 to 460,476
_2223
Ac3H11_2224 - Transcriptional regulator, TetR family, at 460,484 to 461,182
_2224
Ac3H11_2225 - Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11), at 461,285 to 461,821
_2225
Ac3H11_2226 - Zinc uptake regulation protein ZUR, at 463,324 to 463,749
_2226
Ac3H11_2227 - Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1), at 463,746 to 464,429
_2227
Group
Condition
Ac3H11
_2223
Ac3H11
_2224
Ac3H11
_2225
Ac3H11
_2226
Ac3H11
_2227
stress
copper (II) chloride 1 mM
-0.2
-0.5
-0.8
N.D.
+0.1
stress
Tetracycline 0.0001 mg/ml
+0.2
-0.6
-1.1
N.D.
+0.0
lb
LB
-0.3
-0.5
-0.4
N.D.
-0.1
stress
Paraquat dichloride 0.01 mg/ml
-0.5
-0.5
-0.3
N.D.
+0.1
stress
Fusidic 0.001 mg/ml
-0.2
-0.9
-0.0
N.D.
+0.0
lb
LB
-0.1
-0.4
-0.4
N.D.
-0.1
lb
LB
-0.1
-0.7
-0.2
N.D.
-0.1
stress
Cobalt chloride 0.32 mM
-0.1
+0.1
-0.9
N.D.
-0.1
stress
Cisplatin 0.0025 mg/ml
-0.0
-0.3
-0.6
N.D.
-0.0
stress
Chlorite 0.1 mM
-0.1
-0.4
-0.5
N.D.
+0.1
nitrogen source
L-Alanine (N)
-0.6
+0.1
-0.5
N.D.
+0.4
stress
perchlorate 10 mM
-0.1
-0.4
-0.4
N.D.
+0.2
nitrogen source
Ammonium chloride (N)
-0.4
-0.2
+0.4
N.D.
-0.5
stress
Doxycycline hyclate 0.000025 mg/ml
+0.1
-0.5
-0.2
N.D.
+0.1
stress
syringaldehyde 2.5 mM
+0.4
-0.6
-0.0
N.D.
-0.2
stress
Sisomicin 0.001 mg/ml
+0.3
-0.5
-0.3
N.D.
+0.1
stress
Bacitracin 0.008 mg/ml
+0.1
-0.3
-0.3
N.D.
+0.2
stress
Cisplatin 0.005 mg/ml
+0.2
-0.1
-0.9
N.D.
+0.6
stress
Bacitracin 0.032 mg/ml
-0.1
-0.3
-0.1
N.D.
+0.4
carbon source
D,L-Lactate (C)
+0.4
-0.3
-0.1
N.D.
-0.2
lb
LB
-0.1
-0.5
+0.3
N.D.
+0.2
stress
copper (II) chloride 1 mM
+0.1
-0.6
+0.1
N.D.
+0.3
stress
Cobalt chloride 0.4 mM
+0.6
+0.3
-0.6
N.D.
-0.1
motility
inner cut, R2A soft agar motility assay
-0.5
+0.2
+0.1
N.D.
+0.5
carbon source
succinate (C)
+0.2
+0.4
-0.3
N.D.
+0.2
carbon source
a-Ketoglutaric (C)
+0.5
-0.4
-0.0
N.D.
+0.3
carbon source
succinate (C)
+0.1
+0.5
-0.4
N.D.
+0.4
carbon source
D-Gluconic Acid (C)
+0.7
+0.2
-0.3
N.D.
+0.2
nitrogen source
L-tyrosine (N)
+0.2
+0.8
+0.0
N.D.
-0.1
motility
inner cut, R2A soft agar motility assay
+0.6
-0.0
-0.1
N.D.
+0.5
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