Fitness for 5 genes in Acidovorax sp. GW101-3H11

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500 ntAc3H11_2217 and Ac3H11_2218 are separated by 124 nucleotidesAc3H11_2218 and Ac3H11_2219 are separated by 4 nucleotidesAc3H11_2219 and Ac3H11_2220 are separated by 75 nucleotidesAc3H11_2220 and Ac3H11_2221 are separated by 22 nucleotides Ac3H11_2217 - Lipid IVA 3-deoxy-D-manno-octulosonic acid transferase (EC 2.4.99.12) [often with (EC 2.4.99.13) also], at 449,776 to 451,143 _2217 Ac3H11_2218 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 451,268 to 453,568 _2218 Ac3H11_2219 - Type I secretion outer membrane protein, TolC precursor, at 453,573 to 454,907 _2219 Ac3H11_2220 - Rhodanese-like domain protein, at 454,983 to 455,336 _2220 Ac3H11_2221 - Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77), at 455,359 to 456,072 _2221
Group Condition Ac3H11_2217 Ac3H11_2218 Ac3H11_2219 Ac3H11_2220 Ac3H11_2221
nitrogen source Ammonium chloride (N) N.D. +0.1 -3.1 N.D. -1.9
nitrogen source L-Alanine (N) N.D. -0.1 -3.6 N.D. -0.8
nitrogen source L-Threonine (N) N.D. +0.1 -1.6 N.D. -1.1
carbon source Tween 20 (C) N.D. +0.1 +0.3 N.D. -2.2
stress sodium fluoride 20 mM N.D. +0.1 -0.6 N.D. -1.1
stress nitrate 100 mM N.D. +0.0 -0.8 N.D. -0.6
stress 2-Furfuraldehyde 0.06 vol% N.D. +0.0 -0.6 N.D. -0.7
lb LB N.D. -0.0 -0.8 N.D. -0.4
stress nitrate 45 mM N.D. +0.1 -1.0 N.D. -0.3
nitrogen source L-Isoleucine (N) N.D. +0.1 -0.7 N.D. -0.4
stress 5-Hydroxymethylfurfural 5 mM N.D. +0.1 -0.5 N.D. -0.5
stress Tetracycline 0.0001 mg/ml N.D. +0.1 -0.1 N.D. -1.0
stress A22 0.025 mg/ml N.D. +0.1 +0.1 N.D. -1.0
motility inner cut, R2A soft agar motility assay N.D. +0.0 -0.9 N.D. +0.4
stress Cisplatin 0.005 mg/ml N.D. +0.5 -0.8 N.D. +0.3
stress copper (II) chloride 2 mM N.D. -0.2 -0.3 N.D. +0.7
stress D-Cycloserine 0.05 mg/ml N.D. +0.2 -0.6 N.D. +1.0
pH LB, pH9 N.D. +0.0 -0.3 N.D. +0.9
carbon source D,L-Lactate (C) N.D. +0.1 +0.3 N.D. +0.6
carbon source pyruvate (C) N.D. +0.1 +0.5 N.D. +0.4
pH LB, pH5 N.D. +0.1 +0.2 N.D. +0.8
pH LB, pH5 N.D. +0.1 +0.1 N.D. +0.8
carbon source D-Galactose (C) N.D. +0.0 +0.8 N.D. +0.2
stress Bacitracin 0.008 mg/ml N.D. +0.1 +0.8 N.D. +0.2
carbon source succinate (C) N.D. +0.0 +0.8 N.D. +0.4
lb LB N.D. +0.0 +0.9 N.D. +0.3
stress Nickel (II) chloride 0.8 mM N.D. +0.2 +0.6 N.D. +0.5
pH LB, pH10 N.D. +0.3 -0.4 N.D. +1.7
nitrogen source L-tyrosine (N) N.D. +0.2 +0.7 N.D. +0.9
pH LB, pH10 N.D. +0.4 -0.2 N.D. +1.7
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