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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_2209 and Ac3H11_2210 are separated by 55 nucleotides
Ac3H11_2210 and Ac3H11_2211 overlap by 9 nucleotides
Ac3H11_2211 and Ac3H11_2212 overlap by 44 nucleotides
Ac3H11_2212 and Ac3H11_2213 overlap by 4 nucleotides
Ac3H11_2209 - hypothetical protein, at 439,699 to 440,208
_2209
Ac3H11_2210 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 440,264 to 444,100
_2210
Ac3H11_2211 - hypothetical protein, at 444,092 to 444,304
_2211
Ac3H11_2212 - Permease of the drug/metabolite transporter (DMT) superfamily, at 444,261 to 445,187
_2212
Ac3H11_2213 - Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63), at 445,184 to 445,756
_2213
Group
Condition
Ac3H11
_2209
Ac3H11
_2210
Ac3H11
_2211
Ac3H11
_2212
Ac3H11
_2213
stress
Bacitracin 0.008 mg/ml
N.D.
+0.2
-1.6
-0.3
+0.1
stress
D-Cycloserine 0.05 mg/ml
N.D.
+0.3
-1.1
+0.1
-0.4
carbon source
a-Ketoglutaric (C)
N.D.
+0.2
-0.5
-0.2
-0.2
stress
Chlorite 0.1 mM
N.D.
+0.1
-0.7
-0.0
+0.2
stress
Zinc 1 mM
N.D.
+0.2
-0.2
+0.1
-0.5
nitrogen source
L-Isoleucine (N)
N.D.
+0.3
-0.8
+0.1
+0.0
stress
Cisplatin 0.0025 mg/ml
N.D.
-0.0
+0.8
+0.1
-1.1
stress
Aluminum chloride 2 mM
N.D.
+0.2
-0.2
+0.3
-0.4
stress
perchlorate 10 mM
N.D.
+0.2
+0.0
+0.3
-0.6
motility
inner cut, R2A soft agar motility assay
N.D.
+0.2
-0.4
-0.1
+0.5
stress
nitrite 10 mM
N.D.
+0.2
-0.7
+0.2
+0.3
nitrogen source
L-Histidine (N)
N.D.
+0.1
-0.5
+0.2
+0.3
carbon source
succinate (C)
N.D.
-0.2
+0.5
+0.1
-0.3
nitrogen source
L-Leucine (N)
N.D.
+0.2
+0.4
+0.3
-0.5
carbon source
succinate (C)
N.D.
-0.2
+0.4
-0.1
+0.3
stress
copper (II) chloride 1 mM
N.D.
+0.1
-0.2
+0.2
+0.6
motility
inner cut, R2A soft agar motility assay
N.D.
-0.0
+1.0
-0.1
-0.0
carbon source
D-Gluconic Acid (C)
N.D.
-0.1
+0.3
+0.4
+0.3
carbon source
D-Gluconic Acid (C)
N.D.
-0.0
+0.8
+0.1
+0.2
carbon source
D-Glucose (C)
N.D.
+0.0
+0.6
+0.2
+0.2
stress
Nickel (II) chloride 0.8 mM
N.D.
+0.2
+0.8
+0.3
+0.0
stress
Paraquat dichloride 0.01 mg/ml
N.D.
+0.2
+1.7
+0.2
-0.7
nitrogen source
D-Alanine (N)
N.D.
+0.2
+0.8
+0.2
+0.1
carbon source
D-Galactose (C)
N.D.
+0.1
+0.5
+0.5
+0.3
stress
Cobalt chloride 0.4 mM
N.D.
+0.2
+0.3
-0.0
+0.9
pH
LB, pH10
N.D.
+0.2
+0.5
-0.1
+0.9
nitrogen source
Ammonium chloride (N)
N.D.
+0.4
+0.7
+0.7
-0.1
stress
copper (II) chloride 2 mM
N.D.
+0.3
+1.5
-0.1
-0.0
motility
inner cut, R2A soft agar motility assay
N.D.
+0.3
+0.6
+0.4
+0.5
phage
phage 93.2
N.D.
-0.1
+1.8
+0.0
+0.5
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