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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_2206 and Ac3H11_2207 overlap by 4 nucleotides
Ac3H11_2207 and Ac3H11_2208 are separated by 306 nucleotides
Ac3H11_2208 and Ac3H11_2209 are separated by 31 nucleotides
Ac3H11_2209 and Ac3H11_2210 are separated by 55 nucleotides
Ac3H11_2206 - Chromate transport protein ChrA, at 435,118 to 436,494
_2206
Ac3H11_2207 - Chromate resistance protein ChrB, at 436,491 to 437,459
_2207
Ac3H11_2208 - Propionate--CoA ligase (EC 6.2.1.17), at 437,766 to 439,667
_2208
Ac3H11_2209 - hypothetical protein, at 439,699 to 440,208
_2209
Ac3H11_2210 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 440,264 to 444,100
_2210
Group
Condition
Ac3H11
_2206
Ac3H11
_2207
Ac3H11
_2208
Ac3H11
_2209
Ac3H11
_2210
stress
D-Cycloserine 0.05 mg/ml
-0.1
-0.6
-0.0
N.D.
+0.3
nitrogen source
L-Alanine (N)
-0.5
+0.5
-0.1
N.D.
+0.1
stress
Nickel (II) chloride 0.8 mM
+0.3
-0.4
+0.1
N.D.
+0.2
motility
inner cut, R2A soft agar motility assay
+0.2
-0.4
+0.3
N.D.
+0.2
carbon source
a-Ketoglutaric (C)
-0.0
+0.4
+0.2
N.D.
-0.2
carbon source
L-Lactate (C)
+0.2
+0.5
+0.1
N.D.
-0.1
lb
LB
-0.0
+0.5
+0.1
N.D.
+0.1
carbon source
D,L-Lactate (C)
+0.2
+0.5
+0.2
N.D.
-0.0
stress
perchlorate 10 mM
-0.1
+0.6
+0.1
N.D.
+0.2
carbon source
casaminos (C)
+0.2
+0.4
+0.1
N.D.
+0.1
carbon source
a-Ketoglutaric (C)
+0.0
+0.4
+0.2
N.D.
+0.2
carbon source
Tween 20 (C)
+0.2
+0.4
+0.1
N.D.
+0.2
stress
perchlorate 25 mM
+0.1
+0.5
+0.1
N.D.
+0.1
motility
inner cut, R2A soft agar motility assay
+0.4
+0.2
+0.4
N.D.
-0.0
lb
LB
+0.1
+0.6
+0.1
N.D.
+0.1
carbon source
D-Fructose (C)
+0.1
+0.4
+0.1
N.D.
+0.3
nitrogen source
Uridine (N)
+0.3
+0.4
+0.0
N.D.
+0.2
carbon source
D-Mannose (C)
+0.2
+0.5
+0.1
N.D.
+0.2
stress
Paraquat dichloride 0.01 mg/ml
+0.0
+0.7
+0.1
N.D.
+0.2
pH
LB, pH10
+0.2
+0.6
+0.1
N.D.
+0.2
carbon source
D,L-Lactate (C)
+0.2
+0.4
+0.1
N.D.
+0.3
carbon source
D-Gluconic Acid (C)
+0.3
+0.5
+0.3
N.D.
-0.0
carbon source
L-Arabinose (C)
+0.2
+0.7
+0.1
N.D.
+0.1
carbon source
D-Lactate (C)
+0.2
+0.6
+0.1
N.D.
+0.2
nitrogen source
L-Leucine (N)
+0.2
+0.7
+0.2
N.D.
+0.2
motility
inner cut, R2A soft agar motility assay
+0.3
+0.5
+0.2
N.D.
+0.3
nitrogen source
D-Alanine (N)
+0.1
+1.0
+0.0
N.D.
+0.2
nitrogen source
Ammonium chloride (N)
+0.2
+0.4
+0.5
N.D.
+0.4
carbon source
D-Galactose (C)
+0.1
+1.0
+0.1
N.D.
+0.1
stress
Cisplatin 0.005 mg/ml
+0.4
+0.9
+0.0
N.D.
+0.1
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