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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_2192 and Ac3H11_2193 are separated by 289 nucleotides
Ac3H11_2193 and Ac3H11_2194 are separated by 70 nucleotides
Ac3H11_2194 and Ac3H11_2195 are separated by 145 nucleotides
Ac3H11_2195 and Ac3H11_2196 are separated by 12 nucleotides
Ac3H11_2192 - FIG000557: hypothetical protein co-occurring with RecR, at 422,095 to 422,943
_2192
Ac3H11_2193 - UPF0311 protein RPA1785, at 423,233 to 423,616
_2193
Ac3H11_2194 - putative exported protein, at 423,687 to 424,688
_2194
Ac3H11_2195 - Chlorogenate esterase, at 424,834 to 426,528
_2195
Ac3H11_2196 - hypothetical protein, at 426,541 to 427,050
_2196
Group
Condition
Ac3H11
_2192
Ac3H11
_2193
Ac3H11
_2194
Ac3H11
_2195
Ac3H11
_2196
stress
Cisplatin 0.0025 mg/ml
-0.7
+0.1
-0.7
+0.1
-0.3
carbon source
succinate (C)
-0.1
-0.0
-0.9
+0.2
-0.1
motility
inner cut, R2A soft agar motility assay
+0.1
-0.3
-0.4
+0.2
+0.2
stress
Aluminum chloride 2 mM
-0.5
+0.2
+0.4
+0.0
-0.4
nitrogen source
L-Alanine (N)
-0.8
-0.0
+0.6
+0.1
+0.0
stress
nitrite 10 mM
+0.2
+0.1
-0.5
-0.0
+0.2
lb
LB
+0.5
+0.1
-0.3
+0.1
+0.1
phage
phage 93.1
+0.4
+0.4
-0.3
+0.1
+0.0
stress
Nickel (II) chloride 0.8 mM
-0.2
+0.1
+0.4
+0.2
+0.4
carbon source
D-Gluconic Acid (C)
-0.1
+0.6
+0.3
+0.2
-0.1
carbon source
a-Ketoglutaric (C)
+0.1
+0.5
-0.1
+0.2
+0.4
temperature
LB 30C
+0.4
+0.1
+0.3
+0.2
+0.2
carbon source
D-Mannose (C)
+0.4
+0.3
+0.2
+0.2
+0.0
carbon source
casaminos (C)
+0.3
+0.4
+0.1
+0.2
+0.1
stress
Chloramphenicol 0.0005 mg/ml
+0.5
-0.1
+0.3
+0.2
+0.2
motility
inner cut, R2A soft agar motility assay
+0.6
+0.2
-0.2
+0.2
+0.4
nitrogen source
L-Leucine (N)
+0.1
+0.1
+0.7
+0.1
+0.1
carbon source
Tween 20 (C)
+0.2
+0.4
+0.3
+0.2
+0.2
carbon source
D-Fructose (C)
+0.2
+0.4
+0.1
+0.3
+0.2
stress
Chloramphenicol 0.001 mg/ml
+0.2
+0.1
+0.6
+0.1
+0.2
nitrogen source
L-Threonine (N)
+0.1
+0.3
+0.4
+0.2
+0.2
stress
5-Hydroxymethylfurfural 5 mM
+0.4
+0.3
+0.3
+0.0
+0.2
nitrogen source
Uridine (N)
+0.6
+0.1
+0.3
+0.2
+0.2
carbon source
succinate (C)
+0.3
+0.4
+0.3
+0.2
+0.3
nitrogen source
L-Arginine (N)
+0.3
+0.3
+0.5
+0.1
+0.1
carbon source
pyruvate (C)
+0.3
+0.3
+0.4
+0.2
+0.3
nitrogen source
L-Isoleucine (N)
+0.4
+0.5
+0.5
+0.2
+0.0
pH
LB, pH10
+1.0
+0.1
+0.6
-0.1
+0.1
pH
LB, pH10
+0.2
+0.3
+0.6
+0.3
+0.6
nitrogen source
Ammonium chloride (N)
+0.3
+0.3
+1.2
+0.4
+0.0
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