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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_2168 and Ac3H11_2169 are separated by 255 nucleotides
Ac3H11_2169 and Ac3H11_2170 overlap by 1 nucleotides
Ac3H11_2170 and Ac3H11_2171 are separated by 144 nucleotides
Ac3H11_2171 and Ac3H11_2172 are separated by 512 nucleotides
Ac3H11_2168 - Probable lipoprotein, at 397,328 to 397,993
_2168
Ac3H11_2169 - ABC-type transport system involved in resistance to organic solvents, periplasmic component, at 398,249 to 399,211
_2169
Ac3H11_2170 - Methionine ABC transporter ATP-binding protein, at 399,211 to 400,080
_2170
Ac3H11_2171 - ABC-type transport system involved in resistance to organic solvents, permease component USSDB6A, at 400,225 to 401,349
_2171
Ac3H11_2172 - hypothetical protein, at 401,862 to 401,984
_2172
Group
Condition
Ac3H11
_2168
Ac3H11
_2169
Ac3H11
_2170
Ac3H11
_2171
Ac3H11
_2172
motility
inner cut, R2A soft agar motility assay
N.D.
-0.3
-4.5
-2.9
-1.9
stress
Cisplatin 0.005 mg/ml
N.D.
-1.0
-4.4
-2.7
-0.8
stress
Paraquat dichloride 0.01 mg/ml
N.D.
-1.3
-1.5
-4.5
-1.1
pH
LB, pH10
N.D.
-0.6
-5.0
-1.9
+0.2
stress
perchlorate 10 mM
N.D.
-0.1
-4.4
-1.1
-0.8
carbon source
D-Gluconic Acid (C)
N.D.
-1.4
-3.0
-1.7
-0.1
phage
phage 93.2
N.D.
-0.7
-3.2
-1.6
-0.0
stress
2-Furfuraldehyde 0.06 vol%
N.D.
-0.2
-3.2
-1.4
-0.4
carbon source
succinate (C)
N.D.
-1.3
-2.8
-1.1
+0.3
carbon source
D-Gluconic Acid (C)
N.D.
-1.1
-4.6
+0.8
+0.0
carbon source
a-Ketoglutaric (C)
N.D.
-0.7
-2.0
-2.1
+0.1
carbon source
propionate (C)
N.D.
-2.1
-2.4
-0.6
+0.3
carbon source
succinate (C)
N.D.
-1.4
-2.3
-0.6
-0.3
lb
LB
N.D.
-0.5
-0.6
-3.5
-0.0
stress
Bacitracin 0.008 mg/ml
N.D.
-1.7
-1.6
-1.9
+0.7
carbon source
D,L-Lactate (C)
N.D.
-1.2
-2.2
-1.4
+0.2
carbon source
D-Ribose (C)
N.D.
-0.9
-0.8
-3.0
+0.3
carbon source
L-Lactate (C)
N.D.
-1.2
-1.2
-2.2
+0.2
carbon source
D-Lactate (C)
N.D.
-1.0
-1.2
-2.2
+0.1
stress
Chlorite 0.1 mM
N.D.
-0.2
+1.3
-4.5
-0.8
stress
nitrite 10 mM
N.D.
-1.0
+0.7
-3.3
-0.6
carbon source
succinate (C)
N.D.
-1.5
-1.5
-0.7
-0.2
stress
copper (II) chloride 1 mM
N.D.
-0.5
-1.8
-1.6
+0.0
carbon source
D-Glucose (C)
N.D.
-0.9
-1.7
-1.4
+0.4
stress
syringaldehyde 2.5 mM
N.D.
-0.6
-2.5
-0.5
+0.3
carbon source
D-Fructose (C)
N.D.
-0.6
-1.2
-2.2
+0.7
nitrogen source
Ammonium chloride (N)
N.D.
-0.1
-3.3
+0.4
+0.1
stress
Polymyxin B sulfate 0.0001 mg/ml
N.D.
-1.2
-2.9
+0.7
+0.5
carbon source
L-Arabinose (C)
N.D.
-0.6
-1.1
-1.8
+1.0
carbon source
pyruvate (C)
N.D.
-1.3
-1.5
+1.1
-0.1
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