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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_2123 and Ac3H11_2124 are separated by 246 nucleotides
Ac3H11_2124 and Ac3H11_2125 are separated by 11 nucleotides
Ac3H11_2125 and Ac3H11_2126 are separated by 182 nucleotides
Ac3H11_2126 and Ac3H11_2127 are separated by 9 nucleotides
Ac3H11_2123 - Histone acetyltransferase HPA2 and related acetyltransferases, at 359,067 to 359,558
_2123
Ac3H11_2124 - Reverse transcriptase, at 359,805 to 361,367
_2124
Ac3H11_2125 - Peroxiredoxin, at 361,379 to 361,888
_2125
Ac3H11_2126 - SSU ribosomal protein S17p (S11e), at 362,071 to 362,340
_2126
Ac3H11_2127 - LSU ribosomal protein L29p (L35e), at 362,350 to 362,547
_2127
Group
Condition
Ac3H11
_2123
Ac3H11
_2124
Ac3H11
_2125
Ac3H11
_2126
Ac3H11
_2127
carbon source
L-Lactate (C)
-0.9
-0.4
-0.5
N.D.
N.D.
carbon source
D-Glucose (C)
-0.9
-0.3
-0.6
N.D.
N.D.
carbon source
D-Lactate (C)
-1.2
-0.3
-0.3
N.D.
N.D.
carbon source
a-Ketoglutaric (C)
-0.9
-0.3
-0.5
N.D.
N.D.
carbon source
D-Fructose (C)
-1.0
-0.5
-0.2
N.D.
N.D.
carbon source
D-Fructose (C)
-1.1
-0.3
-0.3
N.D.
N.D.
carbon source
pyruvate (C)
-1.4
-0.1
-0.2
N.D.
N.D.
carbon source
D-Ribose (C)
-0.8
-0.3
-0.5
N.D.
N.D.
carbon source
pyruvate (C)
-0.8
-0.2
-0.6
N.D.
N.D.
carbon source
D,L-Lactate (C)
-0.8
-0.2
-0.5
N.D.
N.D.
stress
Cobalt chloride 0.32 mM
-1.0
-0.1
-0.4
N.D.
N.D.
carbon source
D-Glucose (C)
-0.8
-0.3
-0.4
N.D.
N.D.
carbon source
D-Sorbitol (C)
-1.0
-0.2
-0.3
N.D.
N.D.
stress
Sisomicin 0.001 mg/ml
-1.0
-0.4
-0.0
N.D.
N.D.
phage
phage 93.1
-0.6
-0.5
-0.4
N.D.
N.D.
carbon source
D,L-Lactate (C)
-1.0
-0.1
-0.3
N.D.
N.D.
carbon source
D-Lactate (C)
-1.0
-0.1
-0.3
N.D.
N.D.
carbon source
a-Ketoglutaric (C)
-0.1
-0.6
-0.8
N.D.
N.D.
carbon source
D-Ribose (C)
-0.5
-0.2
-0.7
N.D.
N.D.
carbon source
succinate (C)
-0.8
-0.1
-0.5
N.D.
N.D.
carbon source
Tween 20 (C)
-1.0
-0.1
-0.4
N.D.
N.D.
stress
Cobalt chloride 0.32 mM
-0.8
+0.1
-0.7
N.D.
N.D.
carbon source
D-Mannose (C)
-0.6
-0.3
-0.5
N.D.
N.D.
carbon source
L-Lactate (C)
-0.9
-0.1
-0.3
N.D.
N.D.
stress
Cobalt chloride 0.32 mM
-1.2
-0.0
-0.0
N.D.
N.D.
stress
Phosphomycin 0.06 mg/ml
-0.7
-0.1
-0.5
N.D.
N.D.
stress
Sisomicin 0.0005 mg/ml
-0.3
-0.4
-0.7
N.D.
N.D.
carbon source
L-Arabinose (C)
-0.5
-0.2
-0.6
N.D.
N.D.
stress
Cobalt chloride 0.4 mM
-1.2
+0.1
-0.1
N.D.
N.D.
motility
inner cut, R2A soft agar motility assay
+0.5
-0.3
-0.9
N.D.
N.D.
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