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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_2121 and Ac3H11_2122 are separated by 167 nucleotides
Ac3H11_2122 and Ac3H11_2123 are separated by 61 nucleotides
Ac3H11_2123 and Ac3H11_2124 are separated by 246 nucleotides
Ac3H11_2124 and Ac3H11_2125 are separated by 11 nucleotides
Ac3H11_2121 - putative c'cytochrome, at 357,702 to 358,157
_2121
Ac3H11_2122 - Ni,Fe-hydrogenase I cytochrome b subunit, at 358,325 to 359,005
_2122
Ac3H11_2123 - Histone acetyltransferase HPA2 and related acetyltransferases, at 359,067 to 359,558
_2123
Ac3H11_2124 - Reverse transcriptase, at 359,805 to 361,367
_2124
Ac3H11_2125 - Peroxiredoxin, at 361,379 to 361,888
_2125
Group
Condition
Ac3H11
_2121
Ac3H11
_2122
Ac3H11
_2123
Ac3H11
_2124
Ac3H11
_2125
phage
phage 93.2
-3.1
-0.5
-0.1
-0.3
-0.4
stress
Doxycycline hyclate 0.000025 mg/ml
-2.5
-0.3
-0.1
-0.5
-0.3
carbon source
L-Lactate (C)
-1.4
-0.3
-0.9
-0.4
-0.5
carbon source
D-Glucose (C)
-1.2
-0.4
-0.9
-0.3
-0.6
carbon source
L-Arabinose (C)
-1.5
-0.7
-0.5
-0.3
-0.3
carbon source
D-Lactate (C)
-0.7
-0.7
-1.2
-0.3
-0.3
carbon source
D,L-Lactate (C)
-1.0
-0.4
-0.8
-0.2
-0.5
carbon source
D-Fructose (C)
-0.7
-0.5
-1.0
-0.5
-0.2
carbon source
a-Ketoglutaric (C)
-0.8
-0.6
-0.1
-0.6
-0.8
phage
phage 93.1
-0.7
-0.4
-0.6
-0.5
-0.4
carbon source
pyruvate (C)
-0.6
-0.3
-0.8
-0.2
-0.6
carbon source
a-Ketoglutaric (C)
-0.4
-0.4
-0.9
-0.3
-0.5
carbon source
pyruvate (C)
-0.6
-0.3
-1.4
-0.1
-0.2
carbon source
D-Ribose (C)
-0.7
-0.3
-0.5
-0.2
-0.7
pH
LB, pH10
-1.0
-0.5
+0.1
-0.5
-0.4
carbon source
D-Fructose (C)
-0.5
-0.2
-1.1
-0.3
-0.3
carbon source
D-Glucose (C)
-0.3
-0.5
-0.8
-0.3
-0.4
carbon source
D-Sorbitol (C)
-0.5
-0.3
-1.0
-0.2
-0.3
carbon source
D,L-Lactate (C)
-0.6
-0.3
-1.0
-0.1
-0.3
carbon source
D-Ribose (C)
-0.3
-0.4
-0.8
-0.3
-0.5
pH
LB, pH9
-1.0
-0.4
-0.6
-0.3
+0.0
stress
Sisomicin 0.001 mg/ml
-0.7
+0.0
-1.0
-0.4
-0.0
carbon source
D-Galactose (C)
-0.7
-0.5
-0.4
-0.4
-0.2
carbon source
D-Galactose (C)
-0.5
-0.6
-0.4
-0.3
-0.3
carbon source
succinate (C)
-1.3
-0.3
-0.1
-0.3
-0.1
carbon source
D-Lactate (C)
+0.5
-0.2
-1.0
-0.1
-0.3
nitrogen source
L-Arginine (N)
+0.5
-0.4
-0.7
-0.1
-0.5
stress
Cobalt chloride 0.32 mM
+0.6
-0.1
-1.0
-0.1
-0.4
nitrogen source
L-Threonine (N)
+1.9
-0.5
-0.5
-0.2
-0.4
motility
inner cut, R2A soft agar motility assay
+1.2
+0.0
+0.5
-0.3
-0.9
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