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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_2118 and Ac3H11_2119 overlap by 4 nucleotides
Ac3H11_2119 and Ac3H11_2120 are separated by 134 nucleotides
Ac3H11_2120 and Ac3H11_2121 are separated by 116 nucleotides
Ac3H11_2121 and Ac3H11_2122 are separated by 167 nucleotides
Ac3H11_2118 - putative membrane transport protein, at 355,158 to 356,414
_2118
Ac3H11_2119 - FIG00932140: hypothetical protein, at 356,411 to 356,932
_2119
Ac3H11_2120 - C-type cytochrome biogenesis protein ResA (thioredoxin), at 357,067 to 357,585
_2120
Ac3H11_2121 - putative c'cytochrome, at 357,702 to 358,157
_2121
Ac3H11_2122 - Ni,Fe-hydrogenase I cytochrome b subunit, at 358,325 to 359,005
_2122
Group
Condition
Ac3H11
_2118
Ac3H11
_2119
Ac3H11
_2120
Ac3H11
_2121
Ac3H11
_2122
phage
phage 93.2
-0.2
-0.1
-2.4
-3.1
-0.5
pH
LB, pH10
-0.4
-0.8
-2.9
-1.0
-0.5
carbon source
L-Arabinose (C)
-0.3
-0.3
-2.3
-1.5
-0.7
phage
phage 93.1
-0.6
-0.7
-2.6
-0.7
-0.4
carbon source
pyruvate (C)
-0.6
-1.2
-2.2
-0.6
-0.3
carbon source
L-Lactate (C)
-0.4
-0.7
-1.8
-1.4
-0.3
motility
inner cut, R2A soft agar motility assay
-0.5
-0.7
-2.0
-0.7
-0.5
carbon source
succinate (C)
-0.3
-0.9
-1.9
-0.8
-0.4
carbon source
pyruvate (C)
-0.6
-1.2
-1.9
+0.0
-0.2
carbon source
D-Ribose (C)
-0.3
-0.4
-2.5
-0.3
-0.4
carbon source
D,L-Lactate (C)
-0.3
+0.5
-2.6
-1.0
-0.4
carbon source
D-Galactose (C)
-0.3
-0.8
-1.5
-0.7
-0.5
carbon source
D-Glucose (C)
-0.4
-0.0
-1.8
-1.2
-0.4
carbon source
D-Galactose (C)
-0.3
-0.3
-1.8
-0.5
-0.6
carbon source
D-Fructose (C)
-0.4
-0.4
-2.1
-0.5
-0.2
carbon source
D-Glucose (C)
-0.3
-0.3
-2.1
-0.3
-0.5
carbon source
succinate (C)
-0.5
-0.3
-1.1
-1.3
-0.3
phage
phage 93.1
-0.5
-0.8
-1.1
-0.8
-0.4
carbon source
D-Lactate (C)
-0.3
-0.4
-1.4
-0.7
-0.7
carbon source
D-Gluconic Acid (C)
-0.3
-0.3
-1.9
-0.5
-0.5
carbon source
D-Ribose (C)
-0.3
-0.6
-1.4
-0.7
-0.3
stress
Fusidic 0.001 mg/ml
-0.1
-0.1
-2.2
-0.6
-0.3
carbon source
a-Ketoglutaric (C)
-0.5
-0.7
-0.4
-0.8
-0.6
carbon source
L-Lactate (C)
-0.5
+0.2
-2.5
+0.3
-0.4
carbon source
L-Arabinose (C)
-0.3
-0.5
-1.5
-0.1
-0.4
pH
LB, pH10
-0.2
+0.3
-2.9
+0.4
-0.2
stress
Doxycycline hyclate 0.000025 mg/ml
-0.1
-0.0
+0.7
-2.5
-0.3
stress
Bacitracin 0.016 mg/ml
-0.2
-0.3
-1.7
+0.8
-0.2
nitrogen source
D-Alanine (N)
-0.0
-0.1
+1.6
-1.0
-0.3
nitrogen source
L-Threonine (N)
-0.4
+0.5
+1.3
+1.9
-0.5
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