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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_2077 and Ac3H11_2078 are separated by 111 nucleotides
Ac3H11_2078 and Ac3H11_2079 are separated by 123 nucleotides
Ac3H11_2079 and Ac3H11_2080 are separated by 178 nucleotides
Ac3H11_2080 and Ac3H11_2081 are separated by 593 nucleotides
Ac3H11_2077 - Glucose-6-phosphate isomerase (EC 5.3.1.9), at 301,817 to 303,388
_2077
Ac3H11_2078 - D-mannose isomerase (EC 5.3.1.7)
(from data)
, at 303,500 to 304,774
_2078
Ac3H11_2079 - Membrane protein TerC, possibly involved in tellurium resistance, at 304,898 to 305,584
_2079
Ac3H11_2080 - hypothetical protein, at 305,763 to 305,879
_2080
Ac3H11_2081 - Gluconolactonase (EC 3.1.1.17), at 306,473 to 307,423
_2081
Group
Condition
Ac3H11
_2077
Ac3H11
_2078
Ac3H11
_2079
Ac3H11
_2080
Ac3H11
_2081
carbon source
D-Mannose (C)
N.D.
-5.3
+0.0
-0.2
N.D.
nitrogen source
L-Histidine (N)
N.D.
-0.1
-0.3
-0.6
N.D.
phage
phage 93.1
N.D.
-0.2
-0.1
-0.6
N.D.
stress
perchlorate 10 mM
N.D.
-0.3
-0.1
-0.5
N.D.
nitrogen source
L-Isoleucine (N)
N.D.
-0.0
-1.0
+0.2
N.D.
nitrogen source
Ammonium chloride (N)
N.D.
+0.1
-0.5
-0.4
N.D.
stress
Phosphomycin 0.06 mg/ml
N.D.
-0.3
-0.2
-0.2
N.D.
nitrogen source
D-Alanine (N)
N.D.
-0.3
-0.3
-0.1
N.D.
nitrogen source
Uridine (N)
N.D.
-0.0
-0.4
-0.3
N.D.
nitrogen source
L-Alanine (N)
N.D.
-0.6
-0.2
+0.1
N.D.
nitrogen source
L-Proline (N)
N.D.
-0.1
-0.1
-0.5
N.D.
pH
LB, pH10
N.D.
-0.1
+0.2
-0.7
N.D.
carbon source
succinate (C)
N.D.
+0.2
-0.3
-0.6
N.D.
nitrogen source
L-Leucine (N)
N.D.
+0.0
-0.6
+0.0
N.D.
stress
sodium fluoride 25 mM
N.D.
-0.2
+0.1
-0.4
N.D.
motility
inner cut, R2A soft agar motility assay
N.D.
+0.0
+0.1
-0.6
N.D.
stress
copper (II) chloride 2 mM
N.D.
+0.1
+0.3
-0.8
N.D.
lb
LB
N.D.
+0.2
+0.0
-0.5
N.D.
stress
Cisplatin 0.0025 mg/ml
N.D.
+0.1
-0.4
+0.2
N.D.
lb
LB
N.D.
-0.3
+0.3
-0.1
N.D.
motility
inner cut, R2A soft agar motility assay
N.D.
+0.4
+0.1
-0.4
N.D.
stress
copper (II) chloride 1 mM
N.D.
-0.0
+0.5
-0.4
N.D.
pH
LB, pH10
N.D.
-0.1
+0.5
-0.3
N.D.
stress
Aluminum chloride 2 mM
N.D.
+0.2
+0.3
-0.4
N.D.
stress
Nickel (II) chloride 0.6 mM
N.D.
+0.3
+0.3
-0.4
N.D.
stress
Chlorite 0.1 mM
N.D.
+0.4
+0.2
-0.2
N.D.
stress
Aluminum chloride 4 mM
N.D.
+0.1
+0.4
-0.1
N.D.
stress
Cisplatin 0.005 mg/ml
N.D.
-0.0
-0.0
+0.9
N.D.
lb
LB
N.D.
+0.1
-0.2
+0.9
N.D.
carbon source
a-Ketoglutaric (C)
N.D.
+0.2
+0.2
+0.5
N.D.
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