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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_2061 and Ac3H11_2062 are separated by 168 nucleotides
Ac3H11_2062 and Ac3H11_2063 are separated by 57 nucleotides
Ac3H11_2063 and Ac3H11_2064 are separated by 122 nucleotides
Ac3H11_2064 and Ac3H11_2065 overlap by 11 nucleotides
Ac3H11_2061 - Phosphate regulon transcriptional regulatory protein PhoB (SphR), at 285,485 to 286,201
_2061
Ac3H11_2062 - glucose ABC transporter, substrate-binding component
(from data)
, at 286,370 to 287,620
_2062
Ac3H11_2063 - Maltoporin (maltose/maltodextrin high-affinity receptor, phage lambda receptor protein), at 287,678 to 288,862
_2063
Ac3H11_2064 - glucose ABC transporter, permease component 1
(from data)
, at 288,985 to 289,866
_2064
Ac3H11_2065 - glucose ABC transporter, permease component 2
(from data)
, at 289,856 to 290,725
_2065
Group
Condition
Ac3H11
_2061
Ac3H11
_2062
Ac3H11
_2063
Ac3H11
_2064
Ac3H11
_2065
carbon source
D-Glucose (C)
+2.0
-5.2
-5.3
-5.4
-5.3
carbon source
D-Glucose (C)
+2.3
-3.7
-4.4
-6.5
-4.6
nitrogen source
L-Histidine (N)
+1.4
-3.7
-2.3
-3.9
-3.2
carbon source
D-Mannose (C)
+0.5
-1.6
-1.4
-1.4
-1.6
nitrogen source
L-Serine (N)
+1.4
-1.4
-1.1
-2.1
-1.7
nitrogen source
L-Threonine (N)
+4.0
-2.3
-2.0
-2.4
-2.1
nitrogen source
Ammonium chloride (N)
+6.2
-2.3
-1.9
-3.0
-3.2
nitrogen source
L-Arginine (N)
+1.8
-1.3
-1.0
-1.9
-1.5
pH
LB, pH10
-0.3
-0.5
-0.2
-0.7
-0.1
pH
LB, pH10
-0.3
-0.7
+0.3
+0.1
-0.6
nitrogen source
L-Alanine (N)
+1.0
-0.2
-0.9
-0.1
-0.9
nitrogen source
L-Glutamine (N)
+1.2
-0.7
-0.4
-0.7
-0.5
stress
D-Cycloserine 0.05 mg/ml
-0.2
-0.5
-0.3
-0.2
+0.3
nitrogen source
L-tyrosine (N)
-0.6
+0.4
-0.3
-0.2
-0.0
stress
copper (II) chloride 2 mM
-0.8
-0.2
+0.1
+0.4
-0.1
nitrogen source
L-Proline (N)
+0.5
-0.5
-0.3
-0.3
-0.0
stress
Paraquat dichloride 0.01 mg/ml
+0.1
-1.2
+0.1
+0.2
+0.3
motility
inner cut, R2A soft agar motility assay
+0.2
-0.4
+0.5
-0.5
+0.2
stress
Cobalt chloride 0.32 mM
+0.5
-0.4
-0.3
+0.3
+0.1
nitrogen source
D-Alanine (N)
+1.7
-0.3
-0.3
-0.3
-0.4
stress
Cobalt chloride 0.32 mM
+1.3
-0.4
-0.0
-0.1
-0.0
lb
LB
+1.2
-0.3
-0.1
+0.1
-0.0
carbon source
D-Ribose (C)
-1.0
+0.6
+0.4
+0.4
+0.4
stress
Cobalt chloride 0.16 mM
+1.4
-0.0
+0.1
-0.0
-0.3
carbon source
D-Ribose (C)
-0.8
+0.6
+0.6
+0.6
+0.4
nitrogen source
Uridine (N)
+1.9
+0.1
-0.1
-0.1
-0.3
temperature
LB 30C
+1.6
-0.1
+0.1
-0.0
+0.0
phage
phage 93.1
+4.9
-0.5
-0.6
-0.1
-0.7
phage
phage 93.2
+4.6
-0.0
-0.2
-0.3
-0.6
phage
phage 93.1
+4.9
-0.2
-0.2
-0.3
-0.3
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