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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_2058 and Ac3H11_2059 are separated by 10 nucleotides
Ac3H11_2059 and Ac3H11_2060 are separated by 208 nucleotides
Ac3H11_2060 and Ac3H11_2061 are separated by 140 nucleotides
Ac3H11_2061 and Ac3H11_2062 are separated by 168 nucleotides
Ac3H11_2058 - Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1), at 281,698 to 282,780
_2058
Ac3H11_2059 - Transaldolase (EC 2.2.1.2), at 282,791 to 283,741
_2059
Ac3H11_2060 - two-component system, sensor protein, at 283,950 to 285,344
_2060
Ac3H11_2061 - Phosphate regulon transcriptional regulatory protein PhoB (SphR), at 285,485 to 286,201
_2061
Ac3H11_2062 - glucose ABC transporter, substrate-binding component
(from data)
, at 286,370 to 287,620
_2062
Group
Condition
Ac3H11
_2058
Ac3H11
_2059
Ac3H11
_2060
Ac3H11
_2061
Ac3H11
_2062
carbon source
D-Glucose (C)
-0.1
-4.3
-5.4
+2.0
-5.2
carbon source
D-Glucose (C)
+0.1
-3.8
-5.8
+2.3
-3.7
nitrogen source
L-Histidine (N)
-0.0
-4.3
-2.7
+1.4
-3.7
carbon source
D-Ribose (C)
-0.1
-6.0
+0.4
-1.0
+0.6
carbon source
D-Ribose (C)
+0.0
-6.1
+0.3
-0.8
+0.6
carbon source
Tween 20 (C)
+0.1
-4.4
+0.0
+0.2
+0.0
carbon source
D-Galactose (C)
+0.1
-3.8
+0.1
+0.3
-0.0
carbon source
D-Galactose (C)
+0.3
-3.7
+0.2
+0.1
+0.0
nitrogen source
Uridine (N)
-0.3
-5.0
+0.4
+1.9
+0.1
carbon source
D-Mannose (C)
+0.0
-0.6
-1.1
+0.5
-1.6
carbon source
L-Arabinose (C)
-0.0
-3.1
+0.1
+0.3
+0.2
carbon source
L-Arabinose (C)
-0.1
-3.1
+0.3
+0.1
+0.2
carbon source
pyruvate (C)
+0.1
-2.4
+0.1
-0.2
-0.1
carbon source
L-Arabinose (C)
-0.1
-3.1
+0.2
+0.5
-0.0
nitrogen source
L-Leucine (N)
+0.3
-3.8
+0.5
+0.3
+0.2
carbon source
pyruvate (C)
-0.3
-2.3
+0.3
+0.2
-0.1
nitrogen source
L-Serine (N)
-0.1
-0.9
-0.9
+1.4
-1.4
carbon source
D-Galactose (C)
+0.3
-2.2
-0.0
+0.3
-0.1
nitrogen source
L-Threonine (N)
-0.0
-2.0
-1.4
+4.0
-2.3
carbon source
D,L-Lactate (C)
+0.3
-2.3
-0.0
+0.1
+0.2
carbon source
L-Lactate (C)
+0.0
-2.0
+0.2
+0.2
+0.4
nitrogen source
Ammonium chloride (N)
+0.2
-2.8
-2.2
+6.2
-2.3
nitrogen source
L-Arginine (N)
+0.0
-0.5
-0.6
+1.8
-1.3
nitrogen source
D-Alanine (N)
-0.6
-0.7
+0.8
+1.7
-0.3
stress
Cobalt chloride 0.32 mM
-0.0
-0.2
+1.4
+1.3
-0.4
lb
LB
+0.1
-0.0
+1.2
+1.2
-0.3
stress
Cobalt chloride 0.16 mM
-0.1
+0.0
+1.5
+1.4
-0.0
phage
phage 93.1
-0.2
-0.5
+0.2
+4.9
-0.2
phage
phage 93.2
-0.1
-0.3
+0.3
+4.6
-0.0
phage
phage 93.1
+0.3
+0.1
+0.2
+4.9
-0.5
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