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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_2051 and Ac3H11_2052 overlap by 4 nucleotides
Ac3H11_2052 and Ac3H11_2053 are separated by 85 nucleotides
Ac3H11_2053 and Ac3H11_2054 are separated by 21 nucleotides
Ac3H11_2054 and Ac3H11_2055 are separated by 123 nucleotides
Ac3H11_2051 - Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1), at 272,932 to 273,978
_2051
Ac3H11_2052 - Putative glutathione transporter, ATP-binding component, at 273,975 to 275,012
_2052
Ac3H11_2053 - hypothetical protein, at 275,098 to 275,304
_2053
Ac3H11_2054 - 5'-nucleotidase (EC 3.1.3.5), at 275,326 to 277,194
_2054
Ac3H11_2055 - Probable transcriptional regulator, at 277,318 to 278,163
_2055
Group
Condition
Ac3H11
_2051
Ac3H11
_2052
Ac3H11
_2053
Ac3H11
_2054
Ac3H11
_2055
nitrogen source
L-Alanine (N)
-0.4
+0.3
-5.4
-0.2
-1.2
nitrogen source
Ammonium chloride (N)
+0.6
+0.3
-5.0
-0.1
-2.0
carbon source
D-Fructose (C)
+0.4
+0.1
-0.1
-0.0
-3.7
carbon source
D-Galactose (C)
+0.3
+0.1
-1.1
-0.0
-2.7
carbon source
D-Fructose (C)
+0.3
+0.5
-0.2
-0.1
-3.5
carbon source
D-Glucose (C)
+0.3
+0.3
-0.1
-0.2
-3.1
carbon source
D-Glucose (C)
+0.2
+0.3
-0.4
-0.1
-2.9
carbon source
D-Fructose (C)
+0.1
+0.1
-0.2
+0.0
-2.9
carbon source
D-Sorbitol (C)
+0.2
+0.3
-0.2
-0.1
-2.9
carbon source
D-Galactose (C)
+0.3
+0.1
-0.1
+0.0
-2.4
nitrogen source
D-Alanine (N)
+0.0
+0.4
-0.4
-0.0
-1.7
stress
D-Cycloserine 0.05 mg/ml
+0.1
+0.1
-2.0
-0.2
+0.3
carbon source
D-Mannose (C)
+0.6
+0.3
+0.5
+0.0
-2.9
nitrogen source
L-Isoleucine (N)
-0.6
-0.1
+0.6
+0.2
-1.5
stress
Phosphomycin 0.06 mg/ml
+0.3
+0.5
+0.3
-0.2
-1.4
stress
Chlorite 0.1 mM
+0.9
+0.6
-0.4
+0.0
-1.5
lb
LB
+1.0
+0.9
-0.2
-0.1
-2.0
carbon source
D-Galactose (C)
+0.4
+0.5
+1.1
-0.1
-1.9
nitrogen source
L-Serine (N)
+0.5
+0.5
+0.6
+0.0
-1.5
stress
Zinc 1 mM
+0.5
+0.7
+0.1
-0.1
-1.1
stress
Phosphomycin 0.02 mg/ml
+0.5
+0.6
+0.2
-0.1
-1.0
motility
inner cut, R2A soft agar motility assay
+0.4
+0.5
+0.5
-0.3
-0.8
stress
perchlorate 10 mM
+1.0
+0.9
-0.6
-0.1
-0.8
stress
Sisomicin 0.001 mg/ml
+1.1
+0.5
+0.5
+0.0
-1.5
lb
LB
+0.8
+0.7
+1.0
-0.1
-1.8
stress
perchlorate 25 mM
+0.8
+0.6
+0.4
-0.3
-0.9
stress
Cephalothin 0.005 mg/ml
+0.8
+0.6
-0.8
+0.0
+0.3
stress
Cisplatin 0.0025 mg/ml
+0.9
+0.8
+0.1
+0.0
-0.9
phage
phage 93.2
-0.3
-0.4
+0.1
-0.0
+1.7
stress
Paraquat dichloride 0.01 mg/ml
+1.4
+0.8
+1.4
-0.3
-1.6
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