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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_2040 and Ac3H11_2041 overlap by 4 nucleotides
Ac3H11_2041 and Ac3H11_2042 are separated by 86 nucleotides
Ac3H11_2042 and Ac3H11_2043 are separated by 407 nucleotides
Ac3H11_2043 and Ac3H11_2044 are separated by 36 nucleotides
Ac3H11_2040 - Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73), at 259,802 to 260,383
_2040
Ac3H11_2041 - Cobalamin synthase, at 260,380 to 261,186
_2041
Ac3H11_2042 - Threonine dehydratase biosynthetic (EC 4.3.1.19), at 261,273 to 262,832
_2042
Ac3H11_2043 - OsmC/Ohr family protein, at 263,240 to 263,641
_2043
Ac3H11_2044 - 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-), at 263,678 to 264,295
_2044
Group
Condition
Ac3H11
_2040
Ac3H11
_2041
Ac3H11
_2042
Ac3H11
_2043
Ac3H11
_2044
carbon source
D-Glucose (C)
+0.0
-0.3
-4.8
-0.6
N.D.
carbon source
D-Glucose (C)
+0.2
-0.2
-4.5
-0.5
N.D.
nitrogen source
L-Histidine (N)
+0.4
+0.2
-5.5
-0.1
N.D.
nitrogen source
Ammonium chloride (N)
-0.2
-0.8
-2.7
+0.2
N.D.
nitrogen source
L-Glutamine (N)
+0.1
-0.3
-2.9
-0.2
N.D.
nitrogen source
L-Alanine (N)
-0.3
-0.2
-2.4
-0.1
N.D.
carbon source
D-Mannose (C)
-0.1
+0.1
-2.9
-0.0
N.D.
carbon source
D-Lactate (C)
+0.2
-0.7
-1.9
-0.6
N.D.
carbon source
D-Galactose (C)
+0.0
-0.2
-2.2
-0.2
N.D.
carbon source
D,L-Lactate (C)
-0.1
-0.5
-1.6
-0.3
N.D.
nitrogen source
L-Proline (N)
-0.1
+0.1
-2.5
+0.0
N.D.
carbon source
D-Sorbitol (C)
+0.2
-0.0
-2.5
-0.1
N.D.
carbon source
D-Galactose (C)
+0.2
-0.2
-2.2
-0.2
N.D.
carbon source
L-Lactate (C)
-0.0
-0.4
-1.5
-0.4
N.D.
carbon source
D-Lactate (C)
+0.2
-0.3
-1.6
-0.5
N.D.
carbon source
D-Fructose (C)
+0.2
-0.3
-2.0
-0.1
N.D.
carbon source
L-Arabinose (C)
+0.1
-0.3
-1.8
-0.0
N.D.
carbon source
L-Glutamine (C)
+0.2
-0.3
-1.6
-0.3
N.D.
carbon source
D-Fructose (C)
+0.3
-0.2
-2.0
-0.1
N.D.
carbon source
L-Arabinose (C)
+0.5
-0.3
-2.0
+0.1
N.D.
carbon source
D-Fructose (C)
+0.3
+0.1
-2.1
-0.0
N.D.
carbon source
L-Arabinose (C)
+0.6
-0.2
-1.8
-0.1
N.D.
nitrogen source
D-Alanine (N)
+0.7
-0.4
-1.4
-0.1
N.D.
nitrogen source
Uridine (N)
+0.2
-0.2
-1.6
+0.6
N.D.
carbon source
D-Gluconic Acid (C)
+0.2
-0.6
+1.2
+0.5
N.D.
pH
LB, pH10
+0.6
-0.7
+1.6
+0.4
N.D.
pH
LB, pH10
+0.3
-0.5
+1.7
+0.4
N.D.
stress
D-Cycloserine 0.05 mg/ml
+0.8
-0.2
+1.6
-0.0
N.D.
carbon source
a-Ketoglutaric (C)
-0.2
-0.2
+2.9
+0.8
N.D.
carbon source
a-Ketoglutaric (C)
+0.3
-0.0
+2.6
+0.5
N.D.
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