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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_1983 and Ac3H11_1984 are separated by 146 nucleotides
Ac3H11_1984 and Ac3H11_1985 are separated by 166 nucleotides
Ac3H11_1985 and Ac3H11_1986 are separated by 88 nucleotides
Ac3H11_1986 and Ac3H11_1987 are separated by 92 nucleotides
Ac3H11_1983 - Thymidylate kinase (EC 2.7.4.9), at 198,778 to 200,040
_1983
Ac3H11_1984 - tRNA pseudouridine synthase A (EC 4.2.1.70), at 200,187 to 200,981
_1984
Ac3H11_1985 - Metallo-beta-lactamase family protein, at 201,148 to 202,854
_1985
Ac3H11_1986 - Maleate cis-trans isomerase (EC 5.2.1.1), at 202,943 to 203,695
_1986
Ac3H11_1987 - Tricarboxylate transport protein TctC, at 203,788 to 204,750
_1987
Group
Condition
Ac3H11
_1983
Ac3H11
_1984
Ac3H11
_1985
Ac3H11
_1986
Ac3H11
_1987
stress
copper (II) chloride 2 mM
-0.2
-0.8
-0.3
+0.3
-0.8
stress
Zinc 1 mM
-0.2
-0.8
+0.2
-0.4
-0.2
stress
Cisplatin 0.005 mg/ml
-0.2
-0.7
+0.1
+0.3
-0.6
stress
D-Cycloserine 0.05 mg/ml
-0.1
-0.9
-0.0
-0.1
+0.1
nitrogen source
L-Alanine (N)
-0.0
-1.6
-0.1
+0.7
+0.3
pH
LB, pH10
-0.3
-1.2
+0.5
+0.5
-0.0
stress
Chlorite 0.1 mM
-0.3
-0.1
+0.2
+0.1
-0.5
stress
Aluminum chloride 4 mM
-0.2
-0.7
+0.1
+0.0
+0.2
stress
Cephalothin 0.005 mg/ml
-0.0
-0.3
+0.4
-0.2
-0.3
pH
LB, pH10
-0.2
-0.3
+0.2
-0.3
+0.4
motility
inner cut, R2A soft agar motility assay
+0.3
+0.1
-0.4
+0.1
-0.3
phage
phage 93.2
+0.1
-0.6
+0.3
-0.0
+0.1
lb
LB
-0.1
-0.3
+0.6
-0.2
-0.1
nitrogen source
L-Leucine (N)
+0.3
-0.3
-0.8
+0.3
+0.5
nitrogen source
L-Phenylalanine (N)
+0.0
-0.5
-0.1
+0.4
+0.1
carbon source
D-Gluconic Acid (C)
+0.2
-0.5
-0.1
+0.1
+0.3
phage
phage 93.1
+0.1
-0.6
-0.1
+0.2
+0.6
stress
Phosphomycin 0.06 mg/ml
-0.1
+0.1
+0.2
+0.4
-0.4
nitrogen source
L-Threonine (N)
+0.2
-0.2
-0.2
+0.4
+0.2
stress
Cephalothin 0.01 mg/ml
+0.1
-0.3
+0.4
-0.1
+0.4
stress
2-Furfuraldehyde 0.06 vol%
+0.0
+0.7
+0.2
-0.2
-0.0
stress
Cobalt chloride 0.4 mM
-0.1
-0.2
-0.2
+0.5
+0.6
stress
Paraquat dichloride 0.01 mg/ml
+0.1
+0.5
+0.1
+0.6
-0.3
motility
inner cut, R2A soft agar motility assay
+0.3
+0.1
-0.1
+0.3
+0.4
stress
A22 0.025 mg/ml
+0.2
+0.4
+0.1
+0.3
+0.2
stress
Cobalt chloride 0.32 mM
-0.1
+0.7
+0.0
+0.4
+0.2
carbon source
a-Ketoglutaric (C)
+0.0
+0.7
-0.2
+0.5
+0.4
nitrogen source
Ammonium chloride (N)
+0.4
-0.0
-0.3
+0.1
+1.1
nitrogen source
D-Alanine (N)
+0.2
+0.7
-0.1
+0.2
+0.4
motility
inner cut, R2A soft agar motility assay
+0.1
+0.9
+0.0
+0.4
+0.5
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