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Protein
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Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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500 nt
Ac3H11_1975 and Ac3H11_1976 are separated by 237 nucleotides
Ac3H11_1976 and Ac3H11_1977 are separated by 170 nucleotides
Ac3H11_1977 and Ac3H11_1978 are separated by 71 nucleotides
Ac3H11_1978 and Ac3H11_2979 are separated by 312 nucleotides
Ac3H11_1975 - Cysteine synthase (EC 2.5.1.47), at 186,966 to 187,883
_1975
Ac3H11_1976 - RNA 3'-terminal phosphate cyclase (EC 6.5.1.4), at 188,121 to 189,260
_1976
Ac3H11_1977 - Protein RtcB, at 189,431 to 190,702
_1977
Ac3H11_1978 - Putative stomatin/prohibitin-family membrane protease subunit aq_911, at 190,774 to 191,916
_1978
Ac3H11_2979 - tRNA-Undet-???, at 192,229 to 192,300
_2979
Group
Condition
Ac3H11
_1975
Ac3H11
_1976
Ac3H11
_1977
Ac3H11
_1978
Ac3H11
_2979
pH
LB, pH10
-4.5
-1.0
-0.4
+0.2
-0.7
carbon source
a-Ketoglutaric (C)
-3.6
-0.6
+0.0
+0.1
+0.2
stress
copper (II) chloride 2 mM
-2.6
-1.0
-0.2
-0.1
+0.4
pH
LB, pH10
-1.6
-1.1
+0.2
+0.3
-0.9
stress
Cisplatin 0.005 mg/ml
-3.9
+0.4
+0.4
-0.3
+0.3
lb
LB
-1.6
-0.6
-0.3
-0.2
-0.3
phage
phage 93.1
-1.9
-0.9
-0.1
-0.2
+0.3
stress
Bacitracin 0.016 mg/ml
-1.7
-0.5
-0.3
-0.1
+0.0
nitrogen source
L-Alanine (N)
+0.0
+0.6
-0.3
+0.3
-3.0
stress
perchlorate 10 mM
-3.8
+0.3
+0.5
+0.1
+1.0
stress
2-Furfuraldehyde 0.06 vol%
-1.7
-0.2
+0.0
-0.3
+0.3
stress
Cisplatin 0.0025 mg/ml
-0.4
-0.6
+0.2
-1.0
+0.0
stress
Polymyxin B sulfate 0.0001 mg/ml
-1.2
-0.2
+0.2
-0.2
-0.4
nitrogen source
L-Arginine (N)
-1.9
+0.4
-0.1
-0.0
+0.1
stress
sodium fluoride 25 mM
-1.3
-0.4
+0.3
+0.0
-0.3
carbon source
succinate (C)
-2.1
+0.5
+0.1
-0.2
+0.1
stress
nitrite 10 mM
-2.1
+0.5
+0.3
-0.3
+0.2
stress
Nickel (II) chloride 0.6 mM
-1.4
+0.1
-0.2
-0.4
+0.4
carbon source
D-Ribose (C)
-1.3
-0.1
+0.3
+0.2
-0.3
pH
LB, pH7
-1.6
+0.4
-0.1
-0.1
+0.2
carbon source
succinate (C)
-0.4
+0.6
-0.1
-0.2
-1.1
carbon source
D-Gluconic Acid (C)
-0.6
-0.6
-0.1
-0.2
+0.7
stress
Paraquat dichloride 0.01 mg/ml
+1.2
-0.7
-0.4
+0.2
-1.0
carbon source
D-Galactose (C)
-1.4
+0.5
+0.1
+0.1
+0.4
stress
Sisomicin 0.001 mg/ml
+1.3
-0.8
-0.1
-0.1
+0.1
stress
D-Cycloserine 0.05 mg/ml
+1.1
+1.1
+0.1
-0.3
-1.3
motility
inner cut, R2A soft agar motility assay
+1.5
-0.2
+0.1
+0.3
-0.9
stress
Bacitracin 0.008 mg/ml
+1.4
+0.5
+0.0
-0.4
-0.4
stress
perchlorate 25 mM
-1.4
+1.6
+0.1
-0.2
+1.2
stress
Nickel (II) chloride 0.6 mM
-0.7
+1.0
+0.5
+0.2
+0.5
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