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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_1949 and Ac3H11_1950 are separated by 56 nucleotides
Ac3H11_1950 and Ac3H11_1951 overlap by 4 nucleotides
Ac3H11_1951 and Ac3H11_1952 are separated by 92 nucleotides
Ac3H11_1952 and Ac3H11_1953 are separated by 61 nucleotides
Ac3H11_1949 - TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein, at 163,229 to 164,266
_1949
Ac3H11_1950 - TRAP-type C4-dicarboxylate transport system, large permease component, at 164,323 to 165,621
_1950
Ac3H11_1951 - TRAP-type C4-dicarboxylate transport system, small permease component, at 165,618 to 166,166
_1951
Ac3H11_1952 - hypothetical protein, at 166,259 to 166,387
_1952
Ac3H11_1953 - Transcriptional regulator, at 166,449 to 167,381
_1953
Group
Condition
Ac3H11
_1949
Ac3H11
_1950
Ac3H11
_1951
Ac3H11
_1952
Ac3H11
_1953
stress
Sisomicin 0.0005 mg/ml
-0.2
+0.2
-0.3
-0.3
-3.9
nitrogen source
L-Leucine (N)
-0.4
+0.4
+0.1
-1.0
-3.1
lb
LB
-0.7
-0.5
-0.4
+0.1
-2.4
nitrogen source
L-Threonine (N)
+0.1
+0.1
-0.5
-0.4
-3.1
stress
Thallium(I) acetate 0.0006 mg/ml
-0.0
-0.2
+0.2
+0.0
-3.8
stress
Cobalt chloride 0.32 mM
-0.7
+0.2
+0.3
-1.0
-2.5
carbon source
L-Glutamine (C)
-0.0
+0.1
+0.2
+0.3
-4.2
pH
LB, pH5
-0.2
-0.2
+0.1
-0.2
-2.9
nitrogen source
Ammonium chloride (N)
-0.9
+1.0
-0.4
-1.0
-2.1
stress
Phosphomycin 0.02 mg/ml
-0.4
-0.3
-0.1
-0.3
-2.3
nitrogen source
L-Glutamine (N)
+0.0
+0.1
-0.3
-0.2
-3.0
pH
LB, pH10
-0.2
-0.2
-0.4
-0.7
-1.9
pH
LB, pH9
-0.0
+0.0
-0.3
-0.4
-2.5
nitrogen source
L-Phenylalanine (N)
-0.3
+0.0
+0.2
-0.5
-2.6
carbon source
propionate (C)
-0.3
+0.2
-0.2
+0.1
-3.0
stress
Cobalt chloride 0.32 mM
+0.3
+0.0
-0.4
+0.6
-3.6
stress
sodium fluoride 35 mM
-0.8
-0.2
-0.2
-0.1
-1.8
pH
LB, pH5
+0.1
+0.2
+0.1
-0.3
-3.2
pH
LB, pH10
+0.8
+0.5
-0.7
-0.8
-2.5
carbon source
L-Asparagine (C)
+0.2
-0.3
-0.0
-0.6
-2.0
pH
LB, pH8
+0.5
+0.1
-0.1
-0.1
-2.8
motility
inner cut, R2A soft agar motility assay
-0.9
-0.2
-0.3
+0.7
-1.3
lb
LB
+0.6
+0.1
+0.2
-0.4
-2.3
nitrogen source
D-Alanine (N)
-1.1
+0.6
+0.0
+0.4
-1.5
stress
Nickel (II) chloride 0.8 mM
+0.1
-0.2
+0.3
+0.5
-2.3
lb
LB
+0.3
-0.1
+0.3
+0.5
-2.2
stress
syringaldehyde 2.5 mM
+0.2
-0.2
+0.1
+1.6
-2.7
motility
inner cut, R2A soft agar motility assay
-0.6
+0.0
-0.7
+1.1
+1.1
stress
Doxycycline hyclate 0.000025 mg/ml
+0.6
+0.6
-0.0
-0.2
+2.1
stress
D-Cycloserine 0.05 mg/ml
+0.6
-0.3
+0.3
+0.4
+3.2
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