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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_1936 and Ac3H11_1937 overlap by 4 nucleotides
Ac3H11_1937 and Ac3H11_1938 overlap by 4 nucleotides
Ac3H11_1938 and Ac3H11_1939 are separated by 9 nucleotides
Ac3H11_1939 and Ac3H11_1940 are separated by 192 nucleotides
Ac3H11_1936 - Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1), at 152,217 to 153,035
_1936
Ac3H11_1937 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 153,032 to 153,871
_1937
Ac3H11_1938 - Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1), at 153,868 to 154,944
_1938
Ac3H11_1939 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 154,954 to 155,829
_1939
Ac3H11_1940 - Enoyl-CoA hydratase (EC 4.2.1.17), at 156,022 to 156,819
_1940
Group
Condition
Ac3H11
_1936
Ac3H11
_1937
Ac3H11
_1938
Ac3H11
_1939
Ac3H11
_1940
stress
Bacitracin 0.032 mg/ml
-0.4
-1.0
+0.3
-0.2
-0.2
stress
Cobalt chloride 0.4 mM
-0.4
-0.7
-0.1
+0.1
-0.2
lb
LB
-0.7
-0.3
-0.0
-0.3
+0.2
motility
inner cut, R2A soft agar motility assay
-0.1
-0.8
+0.2
-0.0
-0.2
stress
copper (II) chloride 2 mM
+0.6
-0.1
-0.2
-0.4
-0.8
stress
nitrite 10 mM
-0.1
-0.8
-0.1
-0.1
+0.2
nitrogen source
L-Alanine (N)
+0.0
+0.4
+0.2
+0.1
-1.4
stress
Fusidic 0.001 mg/ml
-0.4
-0.1
+0.2
+0.1
-0.4
phage
phage 93.1
-0.1
+0.3
+0.2
-0.1
-0.9
stress
Cisplatin 0.0025 mg/ml
-0.0
-0.7
-0.0
-0.1
+0.4
carbon source
a-Ketoglutaric (C)
-0.4
+0.3
-0.3
+0.2
+0.0
phage
phage 93.2
-0.3
+1.0
-0.3
-0.4
-0.2
motility
inner cut, R2A soft agar motility assay
+0.1
-0.4
+0.5
-0.3
+0.0
stress
Sisomicin 0.001 mg/ml
-0.4
+0.4
+0.2
-0.1
-0.2
motility
inner cut, R2A soft agar motility assay
+0.4
+0.4
-0.2
-0.2
-0.4
carbon source
propionate (C)
-0.2
-0.3
-0.2
-0.0
+0.9
nitrogen source
L-Leucine (N)
-0.2
-0.1
-0.2
+0.3
+0.5
stress
sodium fluoride 20 mM
+0.3
+0.3
+0.2
+0.1
-0.5
stress
Bacitracin 0.008 mg/ml
+0.5
-0.2
-0.1
+0.0
+0.5
stress
perchlorate 25 mM
+0.1
+0.3
-0.1
-0.2
+0.4
stress
Nickel (II) chloride 0.6 mM
+0.1
+0.7
+0.1
+0.2
-0.4
pH
LB, pH9
-0.0
+0.4
-0.3
-0.0
+0.6
stress
Chlorite 0.1 mM
+0.0
+0.5
-0.0
-0.2
+0.7
stress
Paraquat dichloride 0.01 mg/ml
-0.5
+0.8
-0.0
-0.1
+0.8
stress
Ceftazidime 0.01 mg/ml
+0.1
+0.2
+0.2
-0.1
+0.6
nitrogen source
Ammonium chloride (N)
+0.2
+0.6
+0.6
+0.2
-0.3
carbon source
D-Lactate (C)
-0.0
+0.5
+0.3
+0.3
+0.2
stress
Nickel (II) chloride 0.6 mM
+0.3
+0.5
-0.3
+0.0
+0.7
pH
LB, pH10
+0.1
+0.5
+0.2
-0.4
+1.0
pH
LB, pH10
+0.3
+0.7
+0.2
+0.2
+0.7
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