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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_1934 and Ac3H11_1935 are separated by 204 nucleotides
Ac3H11_1935 and Ac3H11_1936 are separated by 7 nucleotides
Ac3H11_1936 and Ac3H11_1937 overlap by 4 nucleotides
Ac3H11_1937 and Ac3H11_1938 overlap by 4 nucleotides
Ac3H11_1934 - Branched-chain amino acid ABC transporter, amino acid-binding protein (TC 3.A.1.4.1), at 148,982 to 150,148
_1934
Ac3H11_1935 - Acetyl-coenzyme A synthetase (EC 6.2.1.1), at 150,353 to 152,209
_1935
Ac3H11_1936 - Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1), at 152,217 to 153,035
_1936
Ac3H11_1937 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 153,032 to 153,871
_1937
Ac3H11_1938 - Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1), at 153,868 to 154,944
_1938
Group
Condition
Ac3H11
_1934
Ac3H11
_1935
Ac3H11
_1936
Ac3H11
_1937
Ac3H11
_1938
stress
Bacitracin 0.032 mg/ml
-0.1
+0.1
-0.4
-1.0
+0.3
stress
Cisplatin 0.0025 mg/ml
+0.0
-0.3
-0.0
-0.7
-0.0
stress
Cobalt chloride 0.4 mM
-0.1
+0.2
-0.4
-0.7
-0.1
stress
nitrite 10 mM
-0.0
-0.0
-0.1
-0.8
-0.1
stress
D-Cycloserine 0.05 mg/ml
-0.2
-0.5
-0.1
-0.2
-0.1
lb
LB
+0.0
+0.0
-0.7
-0.3
-0.0
nitrogen source
L-Isoleucine (N)
-0.3
-0.4
+0.2
-0.4
-0.0
carbon source
a-Ketoglutaric (C)
-0.2
+0.0
-0.4
+0.3
-0.3
motility
inner cut, R2A soft agar motility assay
-0.0
+0.2
-0.1
-0.8
+0.2
lb
LB
+0.1
+0.1
+0.1
-0.7
+0.1
pH
LB, pH9
-0.0
-0.3
-0.0
+0.4
-0.3
stress
Nickel (II) chloride 0.8 mM
-0.3
-0.2
+0.3
-0.1
+0.1
stress
Bacitracin 0.008 mg/ml
-0.1
-0.0
+0.5
-0.2
-0.1
stress
copper (II) chloride 2 mM
-0.4
+0.1
+0.6
-0.1
-0.2
motility
inner cut, R2A soft agar motility assay
-0.1
+0.0
+0.1
-0.4
+0.5
carbon source
succinate (C)
+0.2
-0.2
-0.2
+0.1
+0.2
pH
LB, pH10
-0.2
-0.4
+0.1
+0.5
+0.2
stress
Nickel (II) chloride 0.6 mM
-0.1
-0.0
+0.3
+0.5
-0.3
stress
Sisomicin 0.001 mg/ml
+0.2
+0.0
-0.4
+0.4
+0.2
stress
Paraquat dichloride 0.01 mg/ml
+0.3
+0.1
-0.5
+0.8
-0.0
stress
Polymyxin B sulfate 0.0001 mg/ml
+0.2
-0.0
+0.1
+0.6
-0.2
pH
LB, pH10
-0.1
-0.3
+0.3
+0.7
+0.2
stress
Cisplatin 0.005 mg/ml
+0.2
+0.4
-0.1
-0.0
+0.3
carbon source
D,L-Lactate (C)
+0.2
+0.1
+0.3
+0.3
+0.1
nitrogen source
Ammonium chloride (N)
+0.1
-0.5
+0.2
+0.6
+0.6
stress
Nickel (II) chloride 0.6 mM
+0.1
-0.0
+0.1
+0.7
+0.1
motility
inner cut, R2A soft agar motility assay
+0.1
+0.2
+0.4
+0.4
-0.2
stress
sodium fluoride 20 mM
+0.0
+0.2
+0.3
+0.3
+0.2
phage
phage 93.2
+0.2
+0.5
-0.3
+1.0
-0.3
carbon source
D-Lactate (C)
+0.3
+0.1
-0.0
+0.5
+0.3
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