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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_1921 and Ac3H11_1922 are separated by 28 nucleotides
Ac3H11_1922 and Ac3H11_1923 overlap by 4 nucleotides
Ac3H11_1923 and Ac3H11_1924 are separated by 23 nucleotides
Ac3H11_1924 and Ac3H11_1925 are separated by 53 nucleotides
Ac3H11_1921 - Acyclic terpenes utilization regulator AtuR, TetR family, at 130,850 to 131,575
_1921
Ac3H11_1922 - Citronellol and citronellal dehydrogenase, at 131,604 to 132,533
_1922
Ac3H11_1923 - Geranyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.5), at 132,530 to 134,143
_1923
Ac3H11_1924 - putative DNA alkylation repair enzyme, at 134,167 to 135,297
_1924
Ac3H11_1925 - Isovaleryl-CoA dehydrogenase (EC 1.3.8.4), at 135,351 to 136,526
_1925
Group
Condition
Ac3H11
_1921
Ac3H11
_1922
Ac3H11
_1923
Ac3H11
_1924
Ac3H11
_1925
pH
LB, pH10
+0.2
+0.0
-0.3
-0.6
-0.3
stress
copper (II) chloride 2 mM
-0.4
-0.1
+0.0
-0.3
-0.1
stress
A22 0.025 mg/ml
+0.1
-0.7
+0.1
-0.2
-0.1
stress
nitrate 100 mM
+0.1
-0.8
-0.1
+0.3
-0.1
nitrogen source
D-Alanine (N)
-0.5
-0.4
-0.1
+0.1
+0.1
motility
inner cut, R2A soft agar motility assay
+0.2
-0.4
-0.1
-0.0
-0.3
stress
syringaldehyde 2.5 mM
-0.1
-0.6
-0.2
+0.1
+0.1
stress
Bacitracin 0.016 mg/ml
-0.0
-0.4
+0.2
-0.3
-0.1
phage
phage 93.2
+0.0
-0.9
+0.2
-0.0
+0.2
phage
phage 93.1
-0.0
-0.4
+0.1
+0.2
-0.2
nitrogen source
L-Isoleucine (N)
-0.2
+0.3
-0.0
+0.0
-0.4
motility
inner cut, R2A soft agar motility assay
+0.1
-0.7
+0.2
+0.1
+0.1
carbon source
D-Glucose (C)
-0.2
+0.3
-0.4
+0.2
-0.0
stress
nitrite 10 mM
-0.2
+0.5
-0.1
-0.2
+0.1
nitrogen source
Ammonium chloride (N)
-0.7
-0.3
+0.2
+0.4
+0.4
stress
D-Cycloserine 0.05 mg/ml
-0.1
-0.2
+0.2
+0.3
-0.3
stress
Bacitracin 0.008 mg/ml
-0.4
+0.2
+0.2
+0.0
+0.1
stress
Fusidic 0.001 mg/ml
-0.0
+0.5
-0.0
-0.2
+0.2
carbon source
Tween 20 (C)
-0.3
+0.4
+0.0
+0.1
+0.2
nitrogen source
L-Alanine (N)
-0.1
+0.4
-0.1
+0.2
+0.1
stress
Cisplatin 0.0025 mg/ml
-0.2
+0.7
+0.0
+0.0
+0.0
pH
LB, pH6
-0.0
+0.6
-0.0
-0.1
+0.2
carbon source
D-Lactate (C)
+0.0
+0.6
+0.1
-0.1
+0.3
carbon source
D-Gluconic Acid (C)
+0.6
+0.1
+0.5
-0.1
-0.1
carbon source
a-Ketoglutaric (C)
+0.1
+0.5
+0.2
-0.0
+0.2
carbon source
D,L-Lactate (C)
+0.0
+0.5
+0.1
+0.2
+0.1
carbon source
succinate (C)
+0.3
+0.1
+0.2
+0.3
+0.2
carbon source
succinate (C)
+0.1
+0.3
+0.1
-0.0
+0.5
carbon source
D-Lactate (C)
+0.2
+0.3
+0.2
+0.2
+0.2
carbon source
D-Lactate (C)
+0.1
+0.5
+0.3
+0.2
-0.1
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