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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_182 and Ac3H11_183 are separated by 301 nucleotides
Ac3H11_183 and Ac3H11_184 are separated by 135 nucleotides
Ac3H11_184 and Ac3H11_185 are separated by 105 nucleotides
Ac3H11_185 and Ac3H11_186 overlap by 12 nucleotides
Ac3H11_182 - hypothetical protein, at 70,301 to 70,789
_182
Ac3H11_183 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 71,091 to 74,063
_183
Ac3H11_184 - hypothetical protein, at 74,199 to 74,573
_184
Ac3H11_185 - Acetyl-coenzyme A synthetase (EC 6.2.1.1), at 74,679 to 76,364
_185
Ac3H11_186 - hypothetical protein, at 76,353 to 76,529
_186
Group
Condition
Ac3H11
_182
Ac3H11
_183
Ac3H11
_184
Ac3H11
_185
Ac3H11
_186
lb
LB
-0.0
+0.0
-2.1
+0.0
-0.5
carbon source
a-Ketoglutaric (C)
+0.1
-0.3
-2.5
+0.1
+0.2
stress
Paraquat dichloride 0.01 mg/ml
+0.0
-0.1
-1.9
-0.0
-0.3
nitrogen source
L-Alanine (N)
-0.1
+0.0
+0.1
+0.0
-2.2
motility
inner cut, R2A soft agar motility assay
-0.2
-0.3
-1.3
-0.3
+0.1
pH
LB, pH10
-0.0
-0.0
-1.3
-0.4
-0.0
carbon source
succinate (C)
+0.1
-0.1
-1.1
-0.1
-0.3
phage
phage 93.2
+0.1
-0.1
-1.6
+0.0
+0.2
temperature
LB 30C
+0.0
+0.0
-1.5
+0.0
+0.3
stress
Cobalt chloride 0.4 mM
+0.0
+0.2
-1.3
-0.1
-0.0
lb
LB
-0.0
+0.0
-0.7
+0.1
-0.4
nitrogen source
L-Histidine (N)
-0.1
-0.0
-1.1
+0.0
+0.1
stress
Bacitracin 0.008 mg/ml
+0.1
-0.0
-0.8
+0.1
-0.4
stress
Chlorite 0.1 mM
+0.1
+0.0
-0.0
+0.1
-1.1
stress
copper (II) chloride 2 mM
+0.2
-0.1
-0.7
+0.1
-0.4
stress
Zinc 1 mM
+0.1
+0.2
-1.1
+0.0
+0.2
lb
LB
-0.2
-0.2
+0.3
+0.1
-0.5
nitrogen source
L-Isoleucine (N)
-0.1
+0.1
+0.7
-0.1
-0.7
stress
Cobalt chloride 0.16 mM
+0.1
+0.1
-0.6
+0.1
+0.3
carbon source
succinate (C)
+0.0
-0.0
-0.5
+0.1
+0.6
nitrogen source
Ammonium chloride (N)
+0.3
-0.0
+0.7
+0.1
-0.7
stress
copper (II) chloride 1 mM
+0.1
+0.0
-0.5
+0.3
+0.6
stress
Cisplatin 0.005 mg/ml
+0.2
+0.4
-0.9
+0.1
+0.7
pH
LB, pH9
-0.2
-0.1
+0.7
-0.0
+0.3
carbon source
D-Fructose (C)
+0.2
+0.2
-0.2
+0.0
+0.7
phage
phage 93.1
+0.1
+0.1
+1.3
-0.3
-0.1
carbon source
D-Fructose (C)
+0.1
+0.0
+0.5
-0.1
+0.7
stress
A22 0.025 mg/ml
+0.1
+0.0
+1.0
+0.2
-0.0
stress
Cobalt chloride 0.32 mM
+0.2
+0.0
+0.6
+0.2
+0.3
motility
inner cut, R2A soft agar motility assay
+0.2
+0.2
+1.1
-0.1
+0.5
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