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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_1834 and Ac3H11_1835 are separated by 114 nucleotides
Ac3H11_1835 and Ac3H11_1836 are separated by 186 nucleotides
Ac3H11_1836 and Ac3H11_1837 are separated by 36 nucleotides
Ac3H11_1837 and Ac3H11_1838 are separated by 88 nucleotides
Ac3H11_1834 - Soluble lytic murein transglycosylase precursor (EC 3.2.1.-), at 33,806 to 35,833
_1834
Ac3H11_1835 - hypothetical protein, at 35,948 to 36,529
_1835
Ac3H11_1836 - hypothetical protein, at 36,716 to 37,102
_1836
Ac3H11_1837 - Beta-lactamase-like, at 37,139 to 38,083
_1837
Ac3H11_1838 - Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1), at 38,172 to 38,561
_1838
Group
Condition
Ac3H11
_1834
Ac3H11
_1835
Ac3H11
_1836
Ac3H11
_1837
Ac3H11
_1838
stress
Paraquat dichloride 0.01 mg/ml
-0.2
-0.3
-0.5
-1.3
N.D.
carbon source
D-Glucose (C)
-0.6
+0.1
-0.7
-0.8
N.D.
stress
Polymyxin B sulfate 0.0001 mg/ml
-1.3
+0.3
-0.5
-0.4
N.D.
pH
LB, pH10
-1.9
-0.3
+0.5
+0.0
N.D.
nitrogen source
Ammonium chloride (N)
-0.6
-0.4
-0.3
-0.3
N.D.
carbon source
L-Malic (C)
-1.1
+0.0
-0.4
-0.0
N.D.
stress
Chlorite 0.1 mM
-0.3
-0.3
-0.6
-0.2
N.D.
carbon source
succinate (C)
-0.5
+0.0
-0.5
-0.3
N.D.
carbon source
a-Ketoglutaric (C)
-0.2
+0.3
-0.9
-0.6
N.D.
carbon source
succinate (C)
-0.6
+0.0
-0.2
-0.4
N.D.
lb
LB
-0.3
-0.0
-0.6
-0.3
N.D.
stress
nitrate 45 mM
-0.8
-0.2
-0.1
-0.1
N.D.
carbon source
D-Ribose (C)
-0.3
+0.2
-0.3
-0.7
N.D.
carbon source
D-Glucose (C)
-0.7
+0.2
-0.0
-0.6
N.D.
stress
Ceftazidime 0.01 mg/ml
-0.7
-0.2
+0.1
-0.3
N.D.
pH
LB, pH10
-1.8
+0.0
+0.7
+0.1
N.D.
motility
inner cut, R2A soft agar motility assay
-0.4
+0.1
-0.7
-0.1
N.D.
carbon source
D-Fructose (C)
-0.6
+0.1
+0.1
-0.5
N.D.
stress
Bacitracin 0.032 mg/ml
-0.7
-0.2
-0.2
+0.1
N.D.
stress
Doxycycline hyclate 0.000025 mg/ml
-1.1
-0.2
+0.7
-0.2
N.D.
stress
Fusidic 0.001 mg/ml
-0.8
-0.0
+0.4
-0.2
N.D.
stress
Tetracycline 0.0001 mg/ml
-0.8
-0.0
+0.2
+0.1
N.D.
carbon source
D-Gluconic Acid (C)
+0.4
+0.1
-0.1
-0.8
N.D.
nitrogen source
L-Alanine (N)
+0.3
+0.1
-1.0
+0.4
N.D.
carbon source
succinate (C)
-0.6
+0.0
+0.6
-0.1
N.D.
motility
inner cut, R2A soft agar motility assay
-0.3
+0.2
+0.4
-0.4
N.D.
stress
Cisplatin 0.0025 mg/ml
+0.0
-0.6
+0.8
+0.1
N.D.
pH
LB, pH9
-0.8
+0.2
+0.5
+0.5
N.D.
stress
Cobalt chloride 0.4 mM
-0.4
-0.0
+0.8
+0.3
N.D.
stress
D-Cycloserine 0.05 mg/ml
+2.0
-0.4
-0.5
+0.1
N.D.
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