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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_1815 and Ac3H11_1816 are separated by 28 nucleotides
Ac3H11_1816 and Ac3H11_1817 are separated by 55 nucleotides
Ac3H11_1817 and Ac3H11_1818 are separated by 48 nucleotides
Ac3H11_1818 and Ac3H11_1819 are separated by 29 nucleotides
Ac3H11_1815 - Phosphoglycerate mutase (EC 5.4.2.1), at 20,944 to 21,585
_1815
Ac3H11_1816 - Probable lipoprotein transmembrane, at 21,614 to 22,228
_1816
Ac3H11_1817 - tRNA(Cytosine32)-2-thiocytidine synthetase, at 22,284 to 23,225
_1817
Ac3H11_1818 - Dihydroneopterin aldolase (EC 4.1.2.25), at 23,274 to 23,648
_1818
Ac3H11_1819 - FolM Alternative dihydrofolate reductase 1, at 23,678 to 24,463
_1819
Group
Condition
Ac3H11
_1815
Ac3H11
_1816
Ac3H11
_1817
Ac3H11
_1818
Ac3H11
_1819
nitrogen source
L-Phenylalanine (N)
+0.1
-0.3
-0.0
N.D.
-6.0
stress
Paraquat dichloride 0.01 mg/ml
-0.2
-0.2
+0.8
N.D.
-4.3
stress
Chlorite 0.1 mM
-0.0
-0.1
+0.5
N.D.
-4.2
stress
Zinc 1 mM
+0.4
+0.0
+0.3
N.D.
-4.3
lb
LB
-0.1
-0.1
+0.4
N.D.
-3.8
stress
copper (II) chloride 1 mM
-0.1
-0.1
+0.5
N.D.
-3.7
stress
Bacitracin 0.016 mg/ml
-0.1
-0.2
+0.3
N.D.
-3.3
stress
Cisplatin 0.005 mg/ml
+0.1
-0.5
+0.4
N.D.
-3.2
stress
syringaldehyde 2.5 mM
-2.0
-0.3
-0.2
N.D.
-0.3
nitrogen source
Ammonium chloride (N)
-0.5
+0.2
-0.1
N.D.
-2.1
stress
Phosphomycin 0.06 mg/ml
-0.4
+0.0
+0.4
N.D.
-2.1
stress
Cobalt chloride 0.32 mM
-0.5
-0.1
+0.2
N.D.
-1.7
carbon source
propionate (C)
-1.7
-0.5
-0.3
N.D.
+0.5
stress
Nickel (II) chloride 0.6 mM
-0.3
-0.0
+0.3
N.D.
-1.9
stress
perchlorate 10 mM
+0.0
+0.1
+0.5
N.D.
-2.5
carbon source
D-Lactate (C)
-1.1
-0.6
-0.4
N.D.
+0.2
motility
inner cut, R2A soft agar motility assay
+0.5
-0.4
-0.1
N.D.
-1.8
stress
perchlorate 25 mM
+0.1
-0.2
+0.5
N.D.
-2.2
stress
Cobalt chloride 0.32 mM
-0.1
-0.3
+0.2
N.D.
-1.5
pH
LB, pH10
+0.1
+0.2
+0.1
N.D.
-2.1
stress
nitrate 100 mM
-0.3
+0.1
+0.2
N.D.
-1.5
phage
phage 93.2
-0.0
+0.1
+0.2
N.D.
-1.6
stress
copper (II) chloride 2 mM
+0.0
-0.3
+0.4
N.D.
-1.5
stress
Sisomicin 0.001 mg/ml
-0.4
-0.2
+0.6
N.D.
-1.2
lb
LB
-0.2
-0.0
+0.4
N.D.
-1.5
stress
Polymyxin B sulfate 0.0001 mg/ml
+0.1
+0.3
-0.2
N.D.
-1.4
lb
LB
-0.0
-0.2
+0.6
N.D.
-1.1
stress
Cisplatin 0.0025 mg/ml
+0.4
-0.0
+0.6
N.D.
-1.2
carbon source
L-Arabinose (C)
+1.0
-0.2
+0.1
N.D.
-0.7
pH
LB, pH10
+0.2
+0.6
-0.5
N.D.
+1.3
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