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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_1814 and Ac3H11_1815 overlap by 17 nucleotides
Ac3H11_1815 and Ac3H11_1816 are separated by 28 nucleotides
Ac3H11_1816 and Ac3H11_1817 are separated by 55 nucleotides
Ac3H11_1817 and Ac3H11_1818 are separated by 48 nucleotides
Ac3H11_1814 - low-specificity D-threonine aldolase, at 19,791 to 20,960
_1814
Ac3H11_1815 - Phosphoglycerate mutase (EC 5.4.2.1), at 20,944 to 21,585
_1815
Ac3H11_1816 - Probable lipoprotein transmembrane, at 21,614 to 22,228
_1816
Ac3H11_1817 - tRNA(Cytosine32)-2-thiocytidine synthetase, at 22,284 to 23,225
_1817
Ac3H11_1818 - Dihydroneopterin aldolase (EC 4.1.2.25), at 23,274 to 23,648
_1818
Group
Condition
Ac3H11
_1814
Ac3H11
_1815
Ac3H11
_1816
Ac3H11
_1817
Ac3H11
_1818
carbon source
propionate (C)
-0.7
-1.7
-0.5
-0.3
N.D.
stress
syringaldehyde 2.5 mM
+0.1
-2.0
-0.3
-0.2
N.D.
carbon source
a-Ketoglutaric (C)
-1.4
-0.4
-0.3
-0.1
N.D.
stress
Tetracycline 0.0001 mg/ml
-0.9
-0.8
-0.2
+0.0
N.D.
stress
Cobalt chloride 0.16 mM
-1.1
-0.6
-0.1
-0.1
N.D.
carbon source
D-Lactate (C)
+0.5
-1.1
-0.6
-0.4
N.D.
nitrogen source
D-Alanine (N)
-1.9
+0.2
+0.3
+0.0
N.D.
lb
LB
-0.3
-0.7
-0.3
-0.1
N.D.
nitrogen source
Ammonium chloride (N)
-0.8
-0.5
+0.2
-0.1
N.D.
carbon source
a-Ketoglutaric (C)
-0.8
+0.1
-0.1
-0.3
N.D.
lb
LB
-1.0
-0.0
-0.2
+0.6
N.D.
stress
perchlorate 25 mM
-1.0
+0.1
-0.2
+0.5
N.D.
carbon source
D-Glucose (C)
-1.0
+0.4
-0.1
-0.0
N.D.
motility
inner cut, R2A soft agar motility assay
-0.5
+0.5
-0.4
-0.1
N.D.
stress
Cisplatin 0.005 mg/ml
-0.4
+0.1
-0.5
+0.4
N.D.
stress
Sisomicin 0.001 mg/ml
-0.2
-0.4
-0.2
+0.6
N.D.
stress
Aluminum chloride 4 mM
-0.5
+0.3
-0.2
+0.3
N.D.
carbon source
D-Glucose (C)
-0.8
+0.6
+0.2
-0.2
N.D.
stress
Fusidic 0.001 mg/ml
+0.4
-0.6
+0.0
+0.4
N.D.
stress
Cisplatin 0.0025 mg/ml
-0.5
+0.4
-0.0
+0.6
N.D.
stress
Cephalothin 0.005 mg/ml
+0.9
-0.0
-0.4
-0.0
N.D.
pH
LB, pH10
+0.3
+0.2
+0.6
-0.5
N.D.
stress
Paraquat dichloride 0.01 mg/ml
+0.2
-0.2
-0.2
+0.8
N.D.
stress
copper (II) chloride 1 mM
+0.6
-0.1
-0.1
+0.5
N.D.
lb
LB
+1.0
-0.1
-0.1
+0.4
N.D.
carbon source
L-Arabinose (C)
+0.4
+0.7
+0.3
-0.1
N.D.
carbon source
L-Arabinose (C)
+0.5
+1.0
-0.2
+0.1
N.D.
stress
A22 0.025 mg/ml
+0.7
+0.1
+0.1
+0.4
N.D.
stress
D-Cycloserine 0.05 mg/ml
+0.8
+0.1
+0.8
-0.2
N.D.
motility
inner cut, R2A soft agar motility assay
+1.0
+0.7
+0.3
-0.3
N.D.
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