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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_1811 and Ac3H11_1812 are separated by 369 nucleotides
Ac3H11_1812 and Ac3H11_1813 overlap by 4 nucleotides
Ac3H11_1813 and Ac3H11_1814 are separated by 66 nucleotides
Ac3H11_1814 and Ac3H11_1815 overlap by 17 nucleotides
Ac3H11_1811 - CRISPR-associated protein, Csy1 family, at 13,411 to 14,817
_1811
Ac3H11_1812 - CRISPR-associated helicase Cas3, Yersinia-type, at 15,187 to 18,720
_1812
Ac3H11_1813 - CRISPR-associated protein Cas1, at 18,717 to 19,724
_1813
Ac3H11_1814 - low-specificity D-threonine aldolase, at 19,791 to 20,960
_1814
Ac3H11_1815 - Phosphoglycerate mutase (EC 5.4.2.1), at 20,944 to 21,585
_1815
Group
Condition
Ac3H11
_1811
Ac3H11
_1812
Ac3H11
_1813
Ac3H11
_1814
Ac3H11
_1815
carbon source
propionate (C)
N.D.
+0.1
+0.1
-0.7
-1.7
nitrogen source
D-Alanine (N)
N.D.
+0.0
-0.1
-1.9
+0.2
carbon source
a-Ketoglutaric (C)
N.D.
+0.1
-0.1
-1.4
-0.4
stress
syringaldehyde 2.5 mM
N.D.
+0.1
+0.1
+0.1
-2.0
stress
Tetracycline 0.0001 mg/ml
N.D.
+0.1
-0.0
-0.9
-0.8
stress
Cobalt chloride 0.16 mM
N.D.
+0.1
-0.0
-1.1
-0.6
lb
LB
N.D.
-0.1
-0.1
-1.0
-0.0
nitrogen source
Ammonium chloride (N)
N.D.
+0.1
-0.1
-0.8
-0.5
stress
nitrite 10 mM
N.D.
-0.2
-0.2
-0.3
-0.5
stress
sodium fluoride 25 mM
N.D.
+0.1
+0.0
-0.8
-0.2
carbon source
a-Ketoglutaric (C)
N.D.
-0.4
+0.2
-0.8
+0.1
lb
LB
N.D.
-0.1
+0.1
-0.7
-0.3
stress
Chlorate 20 mM
N.D.
+0.1
-0.2
-0.4
-0.5
stress
perchlorate 25 mM
N.D.
+0.0
+0.0
-1.0
+0.1
lb
LB
N.D.
+0.1
+0.2
-0.3
-0.7
phage
phage 93.1
N.D.
+0.2
+0.2
-0.9
-0.1
carbon source
D-Lactate (C)
N.D.
-0.1
+0.1
+0.5
-1.1
carbon source
D-Glucose (C)
N.D.
+0.1
-0.0
-1.0
+0.4
carbon source
D-Gluconic Acid (C)
N.D.
+0.1
+0.2
-0.8
+0.1
stress
Doxycycline hyclate 0.000025 mg/ml
N.D.
-0.1
-0.1
+0.5
-0.5
carbon source
D-Glucose (C)
N.D.
-0.1
+0.1
-0.8
+0.6
stress
Fusidic 0.001 mg/ml
N.D.
+0.1
+0.1
+0.4
-0.6
nitrogen source
L-Leucine (N)
N.D.
-0.0
+0.1
-0.5
+0.5
stress
Nickel (II) chloride 0.8 mM
N.D.
+0.2
-0.1
-0.3
+0.4
lb
LB
N.D.
-0.1
+0.0
+1.0
-0.1
stress
Cephalothin 0.005 mg/ml
N.D.
-0.1
+0.0
+0.9
-0.0
stress
sodium fluoride 20 mM
N.D.
+0.1
+0.1
+0.2
+0.7
carbon source
L-Arabinose (C)
N.D.
+0.1
-0.1
+0.4
+0.7
carbon source
L-Arabinose (C)
N.D.
-0.0
-0.0
+0.5
+1.0
motility
inner cut, R2A soft agar motility assay
N.D.
+0.0
+0.3
+1.0
+0.7
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