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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_1799 and Ac3H11_1800 are separated by 117 nucleotides
Ac3H11_1800 and Ac3H11_1801 are separated by 110 nucleotides
Ac3H11_1801 and Ac3H11_1802 are separated by 9 nucleotides
Ac3H11_1802 and Ac3H11_1803 are separated by 19 nucleotides
Ac3H11_1799 - RNA-binding protein Hfq, at 20,515 to 20,769
_1799
Ac3H11_1800 - GTP-binding protein HflX, at 20,887 to 22,008
_1800
Ac3H11_1801 - HflK protein, at 22,119 to 23,438
_1801
Ac3H11_1802 - HflC protein, at 23,448 to 24,356
_1802
Ac3H11_1803 - Putative inner membrane protein YjeT (clustered with HflC), at 24,376 to 24,564
_1803
Group
Condition
Ac3H11
_1799
Ac3H11
_1800
Ac3H11
_1801
Ac3H11
_1802
Ac3H11
_1803
stress
Polymyxin B sulfate 0.0001 mg/ml
N.D.
-0.3
-3.6
-2.1
-0.2
stress
Sisomicin 0.0005 mg/ml
N.D.
-0.7
-1.9
-1.5
-0.6
stress
Tetracycline 0.0001 mg/ml
N.D.
-0.2
-2.7
-2.2
+0.9
stress
Doxycycline hyclate 0.000025 mg/ml
N.D.
-0.6
-2.1
-1.4
-0.1
stress
Zinc 1 mM
N.D.
-0.7
-2.0
-1.5
+0.4
nitrogen source
Ammonium chloride (N)
N.D.
+0.0
-1.4
-1.3
-1.1
stress
Sisomicin 0.004 mg/ml
N.D.
-0.2
-1.5
-1.6
+0.2
stress
Chloramphenicol 0.001 mg/ml
N.D.
-0.3
-1.8
-1.1
+0.0
carbon source
L-Malic (C)
N.D.
+0.8
-2.2
-2.5
+0.8
stress
Cobalt chloride 0.32 mM
N.D.
-0.4
-1.3
-1.3
+0.2
stress
Cobalt chloride 0.16 mM
N.D.
-0.3
-1.1
-0.8
-0.6
phage
phage 93.1
N.D.
+0.0
-0.7
-0.1
-1.7
stress
Tetracycline 0.00005 mg/ml
N.D.
-0.3
-1.4
-1.0
+0.3
stress
Cobalt chloride 0.32 mM
N.D.
-0.2
-1.2
-1.3
+0.3
motility
inner cut, R2A soft agar motility assay
N.D.
-0.0
-0.8
-1.6
+0.2
pH
LB, pH5
N.D.
+0.3
-1.5
-0.7
-0.4
stress
copper (II) chloride 1 mM
N.D.
-0.3
-1.2
-1.1
+0.6
stress
D-Cycloserine 0.05 mg/ml
N.D.
+1.3
-1.4
-1.0
-0.6
stress
Aluminum chloride 4 mM
N.D.
+0.4
-1.7
-1.1
+0.7
nitrogen source
L-Arginine (N)
N.D.
+0.2
-0.8
-1.1
+0.5
stress
nitrate 20 mM
N.D.
+0.2
-0.9
-1.0
+0.6
lb
LB
N.D.
-0.3
+0.4
+0.4
-1.6
carbon source
succinate (C)
N.D.
+1.0
-1.5
-1.7
+1.2
carbon source
a-Ketoglutaric (C)
N.D.
+0.6
-1.2
-0.8
+0.6
carbon source
L-Arabinose (C)
N.D.
+0.4
-1.0
-1.2
+1.0
stress
Cisplatin 0.005 mg/ml
N.D.
+0.0
-0.7
-0.8
+1.0
stress
copper (II) chloride 2 mM
N.D.
-0.4
-0.6
-0.2
+1.6
carbon source
D-Gluconic Acid (C)
N.D.
-0.1
+1.1
+1.2
-0.0
carbon source
D-Gluconic Acid (C)
N.D.
-0.2
+1.1
+1.2
+0.0
stress
nitrite 10 mM
N.D.
+0.3
+0.5
+1.0
+1.5
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