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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_177 and Ac3H11_178 are separated by 91 nucleotides
Ac3H11_178 and Ac3H11_179 are separated by 184 nucleotides
Ac3H11_179 and Ac3H11_180 are separated by 196 nucleotides
Ac3H11_180 and Ac3H11_181 are separated by 138 nucleotides
Ac3H11_177 - D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30), at 65,390 to 66,163
_177
Ac3H11_178 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 66,255 to 67,439
_178
Ac3H11_179 - Tricarboxylate transport protein TctC, at 67,624 to 68,607
_179
Ac3H11_180 - Universal stress protein family, at 68,804 to 69,241
_180
Ac3H11_181 - FIG00538743: hypothetical protein, at 69,380 to 70,156
_181
Group
Condition
Ac3H11
_177
Ac3H11
_178
Ac3H11
_179
Ac3H11
_180
Ac3H11
_181
stress
nitrate 100 mM
-0.4
+0.0
-0.2
+0.1
-1.2
stress
copper (II) chloride 1 mM
-0.6
-0.2
-0.0
-0.6
-0.1
lb
LB
-0.0
-0.0
+0.1
-0.4
-0.9
motility
inner cut, R2A soft agar motility assay
+0.2
+0.1
+0.0
-0.0
-1.5
phage
phage 93.1
-0.6
-0.0
+0.1
+0.1
-0.9
carbon source
D-Lactate (C)
-0.3
+0.1
-0.1
-0.4
-0.4
carbon source
pyruvate (C)
-0.2
+0.1
+0.1
-0.3
-0.7
stress
Cobalt chloride 0.16 mM
-0.3
+0.1
+0.0
+0.1
-0.9
carbon source
D-Gluconic Acid (C)
-0.2
+0.1
+0.3
-0.3
-0.7
lb
LB
-0.2
+0.1
+0.1
+0.2
-0.9
stress
sodium fluoride 25 mM
-0.2
+0.2
+0.0
+0.2
-0.7
motility
inner cut, R2A soft agar motility assay
-0.1
-0.2
-0.4
+0.1
+0.5
stress
Paraquat dichloride 0.01 mg/ml
-0.2
+0.1
-0.4
-0.1
+0.7
nitrogen source
L-Alanine (N)
+0.6
+0.1
-0.4
+0.6
-0.7
stress
Cisplatin 0.0025 mg/ml
+0.5
-0.1
+0.1
+0.3
-0.6
nitrogen source
L-Leucine (N)
+0.3
+0.2
+0.2
+0.1
-0.4
nitrogen source
L-Histidine (N)
+0.6
-0.0
+0.2
+0.3
-0.5
motility
inner cut, R2A soft agar motility assay
-0.4
+0.1
+0.1
-0.0
+1.0
stress
Polymyxin B sulfate 0.0001 mg/ml
-0.2
+0.3
+0.2
-0.1
+0.7
stress
Bacitracin 0.008 mg/ml
+0.3
+0.3
+0.1
+0.2
+0.3
nitrogen source
L-Threonine (N)
+0.6
+0.2
+0.1
-0.2
+0.5
nitrogen source
Uridine (N)
+0.7
+0.2
+0.1
+0.3
+0.0
stress
D-Cycloserine 0.05 mg/ml
+1.2
-0.3
-0.1
+0.3
+0.3
temperature
LB 23C
+1.1
+0.4
+0.0
+0.2
-0.2
temperature
LB 23C
+1.1
+0.2
-0.1
+0.2
+0.1
temperature
LB 30C
+0.9
+0.1
-0.1
+0.5
+0.1
nitrogen source
D-Alanine (N)
+0.5
+0.1
+0.4
+0.2
+0.5
pH
LB, pH10
+0.3
+0.1
+0.3
+0.2
+0.7
temperature
LB 30C
+1.2
+0.3
-0.1
+0.5
+0.5
nitrogen source
Ammonium chloride (N)
+1.1
+0.1
+0.3
-0.2
+1.2
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