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Cofit
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_1765 and Ac3H11_1766 are separated by 317 nucleotides
Ac3H11_1766 and Ac3H11_1779 are separated by 94 nucleotides
Ac3H11_1779 and Ac3H11_1767 are separated by 74 nucleotides
Ac3H11_1767 and Ac3H11_1768 are separated by 98 nucleotides
Ac3H11_1765 - Selenide,water dikinase (EC 2.7.9.3), at 378,553 to 379,605
_1765
Ac3H11_1766 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 379,923 to 381,038
_1766
Ac3H11_1779 - tRNA-Ser-CGA, at 381,133 to 381,219
_1779
Ac3H11_1767 - L-lactate dehydrogenase (EC 1.1.2.3), at 381,294 to 382,553
_1767
Ac3H11_1768 - LysR family transcriptional regulator y2377 (Yersinia pestis KIM), at 382,652 to 383,551
_1768
Group
Condition
Ac3H11
_1765
Ac3H11
_1766
Ac3H11
_1779
Ac3H11
_1767
Ac3H11
_1768
nitrogen source
Ammonium chloride (N)
-0.4
-0.5
N.D.
-0.5
-1.3
nitrogen source
L-Alanine (N)
-0.5
-0.2
N.D.
-0.4
-0.6
carbon source
D-Lactate (C)
-0.4
-0.3
N.D.
-0.2
-0.6
stress
Dimethyl Sulfoxide 6 vol%
-0.4
-0.3
N.D.
-0.2
-0.3
pH
LB, pH5
-0.2
-0.2
N.D.
-0.1
-0.5
stress
Phosphomycin 0.06 mg/ml
+0.2
-0.5
N.D.
-0.3
-0.4
stress
Polymyxin B sulfate 0.0001 mg/ml
-0.2
+0.2
N.D.
-0.2
-0.7
carbon source
D-Fructose (C)
-0.2
+0.0
N.D.
-0.3
-0.4
stress
Phosphomycin 0.02 mg/ml
-0.1
-0.1
N.D.
+0.1
-0.7
carbon source
succinate (C)
+0.2
-0.3
N.D.
-0.7
-0.0
carbon source
L-Lactate (C)
-0.0
+0.1
N.D.
-0.2
-0.6
stress
Bacitracin 0.032 mg/ml
-0.1
-0.1
N.D.
+0.1
-0.6
stress
Cobalt chloride 0.32 mM
+0.0
+0.1
N.D.
+0.0
-0.8
stress
sodium fluoride 25 mM
-0.4
+0.3
N.D.
+0.0
-0.5
carbon source
L-Arabinose (C)
-0.0
+0.2
N.D.
-0.0
-0.7
nitrogen source
L-Threonine (N)
+0.1
-0.5
N.D.
-0.3
+0.1
stress
Cobalt chloride 0.16 mM
+0.1
+0.2
N.D.
-0.1
-0.5
stress
perchlorate 25 mM
-0.2
+0.2
N.D.
+0.2
-0.3
motility
inner cut, R2A soft agar motility assay
-0.6
+0.3
N.D.
+0.1
-0.1
carbon source
pyruvate (C)
+0.0
+0.2
N.D.
+0.1
-0.5
stress
Cisplatin 0.005 mg/ml
+0.3
+0.5
N.D.
-0.3
-0.7
stress
D-Cycloserine 0.05 mg/ml
+0.7
-0.6
N.D.
-0.2
+0.0
stress
Paraquat dichloride 0.01 mg/ml
+0.7
+0.3
N.D.
-0.5
-0.5
stress
Nickel (II) chloride 0.6 mM
+0.1
+0.2
N.D.
+0.2
-0.4
stress
Cisplatin 0.0025 mg/ml
+0.1
-0.2
N.D.
+0.6
-0.0
phage
phage 93.1
+0.2
-0.3
N.D.
+0.2
+0.4
stress
Zinc 1 mM
+0.1
+0.4
N.D.
+0.3
-0.3
phage
phage 93.1
+0.1
+0.5
N.D.
-0.2
+0.4
lb
LB
+0.3
+0.4
N.D.
+0.3
-0.1
pH
LB, pH10
+0.1
+0.1
N.D.
+0.4
+0.2
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