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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_175 and Ac3H11_176 are separated by 86 nucleotides
Ac3H11_176 and Ac3H11_177 are separated by 9 nucleotides
Ac3H11_177 and Ac3H11_178 are separated by 91 nucleotides
Ac3H11_178 and Ac3H11_179 are separated by 184 nucleotides
Ac3H11_175 - Permease of the drug/metabolite transporter (DMT) superfamily, at 63,855 to 64,748
_175
Ac3H11_176 - Transcriptional regulator, MarR family, at 64,835 to 65,380
_176
Ac3H11_177 - D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30), at 65,390 to 66,163
_177
Ac3H11_178 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 66,255 to 67,439
_178
Ac3H11_179 - Tricarboxylate transport protein TctC, at 67,624 to 68,607
_179
Group
Condition
Ac3H11
_175
Ac3H11
_176
Ac3H11
_177
Ac3H11
_178
Ac3H11
_179
motility
inner cut, R2A soft agar motility assay
-0.1
-2.8
+0.2
+0.1
+0.0
carbon source
pyruvate (C)
-0.1
-1.3
-0.1
-0.0
-0.2
carbon source
D,L-Lactate (C)
-0.1
-1.0
-0.2
+0.1
-0.2
stress
Paraquat dichloride 0.01 mg/ml
+0.1
-0.9
-0.2
+0.1
-0.4
pH
LB, pH10
-1.0
-1.0
+0.3
+0.1
+0.3
motility
inner cut, R2A soft agar motility assay
-1.2
+0.2
-0.4
+0.1
+0.1
lb
LB
-0.4
-0.7
+0.2
+0.0
-0.2
phage
phage 93.1
+0.4
-0.6
-0.6
-0.0
+0.1
stress
nitrate 100 mM
-0.5
+0.6
-0.4
+0.0
-0.2
nitrogen source
Uridine (N)
-0.2
-1.2
+0.7
+0.2
+0.1
temperature
LB 23C
-0.7
-0.8
+1.1
+0.2
-0.1
nitrogen source
L-Alanine (N)
-0.7
+0.2
+0.6
+0.1
-0.4
stress
Polymyxin B sulfate 0.0001 mg/ml
+0.2
-0.6
-0.2
+0.3
+0.2
stress
Cisplatin 0.0025 mg/ml
+0.4
-1.0
+0.5
-0.1
+0.1
stress
perchlorate 10 mM
+0.3
-0.7
+0.4
+0.1
-0.1
nitrogen source
L-Threonine (N)
-0.3
-0.5
+0.6
+0.2
+0.1
stress
Cobalt chloride 0.16 mM
-0.5
+0.9
-0.3
+0.1
+0.0
nitrogen source
L-Histidine (N)
-0.1
-0.6
+0.6
-0.0
+0.2
stress
Cobalt chloride 0.32 mM
-0.4
+0.9
-0.4
+0.1
-0.0
stress
Fusidic 0.001 mg/ml
-0.3
+0.9
+0.1
-0.2
-0.1
temperature
LB 30C
-0.5
-0.1
+0.9
+0.1
-0.1
stress
copper (II) chloride 2 mM
+0.7
-0.6
+0.1
+0.1
+0.3
temperature
LB 30C
-0.7
+0.2
+1.2
+0.3
-0.1
nitrogen source
D-Alanine (N)
-0.3
+0.4
+0.5
+0.1
+0.4
carbon source
D-Fructose (C)
-0.2
+0.9
+0.2
+0.2
-0.1
pH
LB, pH10
-0.4
+1.6
-0.1
+0.3
-0.1
temperature
LB 23C
-0.6
+0.5
+1.1
+0.4
+0.0
nitrogen source
Ammonium chloride (N)
-0.4
+0.5
+1.1
+0.1
+0.3
stress
D-Cycloserine 0.05 mg/ml
+0.6
+0.7
+1.2
-0.3
-0.1
stress
Cisplatin 0.005 mg/ml
+0.5
+1.4
+0.0
+0.2
-0.0
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