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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_1763 and Ac3H11_1764 are separated by 23 nucleotides
Ac3H11_1764 and Ac3H11_1765 overlap by 1 nucleotides
Ac3H11_1765 and Ac3H11_1766 are separated by 317 nucleotides
Ac3H11_1766 and Ac3H11_1779 are separated by 94 nucleotides
Ac3H11_1763 - Adenylate cyclase (EC 4.6.1.1), at 375,072 to 377,384
_1763
Ac3H11_1764 - Selenophosphate-dependent tRNA 2-selenouridine synthase, at 377,408 to 378,553
_1764
Ac3H11_1765 - Selenide,water dikinase (EC 2.7.9.3), at 378,553 to 379,605
_1765
Ac3H11_1766 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 379,923 to 381,038
_1766
Ac3H11_1779 - tRNA-Ser-CGA, at 381,133 to 381,219
_1779
Group
Condition
Ac3H11
_1763
Ac3H11
_1764
Ac3H11
_1765
Ac3H11
_1766
Ac3H11
_1779
motility
inner cut, R2A soft agar motility assay
-0.3
-0.3
-0.4
-0.2
N.D.
carbon source
D-Lactate (C)
-0.0
-0.3
-0.4
-0.3
N.D.
stress
nitrite 10 mM
-0.2
-0.2
-0.4
-0.1
N.D.
stress
Phosphomycin 0.06 mg/ml
-0.3
-0.3
+0.2
-0.5
N.D.
temperature
LB 23C
-0.1
-0.2
-0.1
-0.4
N.D.
carbon source
succinate (C)
-0.1
-0.4
+0.2
-0.3
N.D.
motility
inner cut, R2A soft agar motility assay
-0.5
+0.1
-0.6
+0.3
N.D.
stress
Cobalt chloride 0.32 mM
-0.4
-0.3
-0.1
+0.2
N.D.
stress
Dimethyl Sulfoxide 6 vol%
+0.2
-0.0
-0.4
-0.3
N.D.
nitrogen source
L-Threonine (N)
-0.1
+0.1
+0.1
-0.5
N.D.
stress
perchlorate 25 mM
+0.1
-0.4
-0.2
+0.2
N.D.
nitrogen source
L-Alanine (N)
+0.3
+0.2
-0.5
-0.2
N.D.
nitrogen source
L-Arginine (N)
+0.4
-0.1
-0.3
-0.2
N.D.
stress
Chlorite 0.1 mM
+0.2
-0.4
+0.2
-0.1
N.D.
stress
Cisplatin 0.0025 mg/ml
+0.3
-0.3
+0.1
-0.2
N.D.
carbon source
D-Lactate (C)
-0.2
-0.2
-0.1
+0.4
N.D.
stress
sodium fluoride 25 mM
+0.1
-0.0
-0.4
+0.3
N.D.
nitrogen source
Ammonium chloride (N)
+0.8
+0.1
-0.4
-0.5
N.D.
stress
Sisomicin 0.001 mg/ml
-0.3
-0.0
+0.3
+0.2
N.D.
phage
phage 93.1
+0.3
+0.1
+0.2
-0.3
N.D.
stress
Paraquat dichloride 0.01 mg/ml
+0.1
-0.6
+0.7
+0.3
N.D.
stress
D-Cycloserine 0.05 mg/ml
+0.3
+0.0
+0.7
-0.6
N.D.
stress
Polymyxin B sulfate 0.0001 mg/ml
+0.6
-0.0
-0.2
+0.2
N.D.
lb
LB
-0.2
+0.2
+0.3
+0.4
N.D.
carbon source
D-Gluconic Acid (C)
+0.4
-0.2
+0.2
+0.4
N.D.
stress
Cobalt chloride 0.32 mM
+0.2
+0.2
-0.1
+0.5
N.D.
stress
Cisplatin 0.005 mg/ml
-0.2
+0.2
+0.3
+0.5
N.D.
lb
LB
+0.6
-0.1
+0.1
+0.2
N.D.
stress
Zinc 1 mM
+0.2
+0.1
+0.1
+0.4
N.D.
phage
phage 93.1
+0.6
+0.2
+0.1
+0.5
N.D.
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