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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_1715 and Ac3H11_1716 are separated by 109 nucleotides
Ac3H11_1716 and Ac3H11_1717 overlap by 1 nucleotides
Ac3H11_1717 and Ac3H11_1718 are separated by 376 nucleotides
Ac3H11_1718 and Ac3H11_1719 are separated by 66 nucleotides
Ac3H11_1715 - Riboflavin kinase (EC 2.7.1.26) / FMN adenylyltransferase (EC 2.7.7.2), at 316,834 to 317,883
_1715
Ac3H11_1716 - Isoleucyl-tRNA synthetase (EC 6.1.1.5), at 317,993 to 320,872
_1716
Ac3H11_1717 - Lipoprotein signal peptidase (EC 3.4.23.36), at 320,872 to 321,390
_1717
Ac3H11_1718 - Sodium-dependent phosphate transporter, at 321,767 to 323,422
_1718
Ac3H11_1719 - Flagellin protein FlaB, at 323,489 to 324,982
_1719
Group
Condition
Ac3H11
_1715
Ac3H11
_1716
Ac3H11
_1717
Ac3H11
_1718
Ac3H11
_1719
stress
Nickel (II) chloride 0.6 mM
N.D.
N.D.
N.D.
-1.8
-0.1
stress
Paraquat dichloride 0.01 mg/ml
N.D.
N.D.
N.D.
-1.3
+0.1
stress
Nickel (II) chloride 0.6 mM
N.D.
N.D.
N.D.
-1.3
+0.1
lb
LB
N.D.
N.D.
N.D.
-1.1
-0.1
stress
Cisplatin 0.005 mg/ml
N.D.
N.D.
N.D.
-1.0
-0.1
stress
Cobalt chloride 0.32 mM
N.D.
N.D.
N.D.
-1.1
+0.1
stress
Cobalt chloride 0.16 mM
N.D.
N.D.
N.D.
-1.0
+0.1
stress
perchlorate 25 mM
N.D.
N.D.
N.D.
-0.9
-0.0
stress
Cisplatin 0.0025 mg/ml
N.D.
N.D.
N.D.
-0.9
+0.1
stress
Sisomicin 0.0005 mg/ml
N.D.
N.D.
N.D.
-0.7
+0.0
stress
sodium fluoride 25 mM
N.D.
N.D.
N.D.
-0.6
+0.0
lb
LB
N.D.
N.D.
N.D.
-0.5
-0.1
stress
Phosphomycin 0.06 mg/ml
N.D.
N.D.
N.D.
-0.4
-0.2
stress
nitrite 10 mM
N.D.
N.D.
N.D.
-0.5
-0.1
stress
Zinc 1 mM
N.D.
N.D.
N.D.
-0.6
+0.1
carbon source
D-Gluconic Acid (C)
N.D.
N.D.
N.D.
-0.5
-0.0
stress
Bacitracin 0.008 mg/ml
N.D.
N.D.
N.D.
-0.5
-0.1
stress
Sisomicin 0.001 mg/ml
N.D.
N.D.
N.D.
-0.6
+0.0
stress
copper (II) chloride 1 mM
N.D.
N.D.
N.D.
-0.7
+0.2
stress
5-Hydroxymethylfurfural 5 mM
N.D.
N.D.
N.D.
-0.5
-0.0
carbon source
D-Gluconic Acid (C)
N.D.
N.D.
N.D.
-0.6
+0.1
stress
Nickel (II) chloride 0.8 mM
N.D.
N.D.
N.D.
-0.5
+0.0
stress
Aluminum chloride 4 mM
N.D.
N.D.
N.D.
-0.4
+0.1
carbon source
D,L-Lactate (C)
N.D.
N.D.
N.D.
-0.4
+0.2
motility
inner cut, R2A soft agar motility assay
N.D.
N.D.
N.D.
-0.5
+0.3
phage
phage 93.1
N.D.
N.D.
N.D.
+0.4
-0.2
stress
Cobalt chloride 0.32 mM
N.D.
N.D.
N.D.
+0.4
-0.2
stress
D-Cycloserine 0.05 mg/ml
N.D.
N.D.
N.D.
+0.7
-0.2
carbon source
a-Ketoglutaric (C)
N.D.
N.D.
N.D.
+0.4
+0.2
phage
phage 93.1
N.D.
N.D.
N.D.
+0.5
+0.2
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