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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_1686 and Ac3H11_1687 are separated by 263 nucleotides
Ac3H11_1687 and Ac3H11_1688 are separated by 13 nucleotides
Ac3H11_1688 and Ac3H11_1689 are separated by 136 nucleotides
Ac3H11_1689 and Ac3H11_1690 are separated by 19 nucleotides
Ac3H11_1686 - SSU ribosomal protein S16p, at 288,381 to 288,632
_1686
Ac3H11_1687 - Phosphinothricin N-acetyltransferase, at 288,896 to 289,300
_1687
Ac3H11_1688 - Probable transmembrane protein, at 289,314 to 289,760
_1688
Ac3H11_1689 - Probable low-affinity inorganic phosphate transporter, at 289,897 to 290,907
_1689
Ac3H11_1690 - Phosphate transport regulator (distant homolog of PhoU), at 290,927 to 291,574
_1690
Group
Condition
Ac3H11
_1686
Ac3H11
_1687
Ac3H11
_1688
Ac3H11
_1689
Ac3H11
_1690
carbon source
pyruvate (C)
N.D.
-0.2
-1.3
-2.5
-2.3
carbon source
pyruvate (C)
N.D.
-0.4
-0.9
-2.9
-1.8
carbon source
D-Gluconic Acid (C)
N.D.
-0.1
-1.6
-1.4
-1.7
carbon source
D-Gluconic Acid (C)
N.D.
-0.2
-1.2
-2.1
-0.9
nitrogen source
L-Alanine (N)
N.D.
-0.4
+0.1
-1.5
-1.9
nitrogen source
Ammonium chloride (N)
N.D.
-0.5
-1.7
+0.4
-1.7
carbon source
D-Lactate (C)
N.D.
-0.1
-0.6
-1.9
-0.8
carbon source
L-Lactate (C)
N.D.
-0.1
-0.3
-1.7
-1.2
carbon source
D-Glucose (C)
N.D.
-0.4
-1.6
-0.5
-0.6
carbon source
D-Glucose (C)
N.D.
-0.5
-1.1
-0.4
-1.0
motility
inner cut, R2A soft agar motility assay
N.D.
-0.2
-0.2
-2.2
-0.4
carbon source
D-Ribose (C)
N.D.
-0.2
-0.9
-0.8
-1.0
temperature
LB 23C
N.D.
-0.3
-0.3
-1.1
-1.1
carbon source
D-Ribose (C)
N.D.
-0.2
-0.7
-0.8
-1.1
carbon source
D-Lactate (C)
N.D.
-0.1
-0.6
-1.0
-0.7
carbon source
D,L-Lactate (C)
N.D.
+0.2
+0.1
-1.2
-1.2
stress
Cisplatin 0.005 mg/ml
N.D.
-0.5
-1.0
+0.8
+0.7
stress
Phosphomycin 0.06 mg/ml
N.D.
-0.1
-0.9
+0.9
+0.9
stress
copper (II) chloride 2 mM
N.D.
-0.3
-1.0
+1.0
+1.2
stress
A22 0.025 mg/ml
N.D.
-0.4
-0.9
+1.2
+1.4
stress
nitrite 10 mM
N.D.
-0.3
-0.2
+1.4
+0.9
stress
Sisomicin 0.001 mg/ml
N.D.
-0.5
-0.5
+1.6
+1.3
stress
Paraquat dichloride 0.01 mg/ml
N.D.
-0.5
-0.4
+1.5
+1.3
lb
LB
N.D.
+0.1
-0.2
+1.1
+1.1
stress
perchlorate 25 mM
N.D.
-0.3
-0.6
+1.6
+1.4
stress
Chlorite 0.1 mM
N.D.
-0.3
-0.5
+2.1
+1.1
lb
LB
N.D.
-0.2
+0.1
+1.3
+1.5
stress
D-Cycloserine 0.05 mg/ml
N.D.
+0.0
+0.1
+1.4
+1.1
lb
LB
N.D.
-0.3
-0.2
+1.6
+1.6
stress
perchlorate 10 mM
N.D.
-0.0
-0.0
+1.6
+1.5
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