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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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500 nt
Ac3H11_165 and Ac3H11_166 are separated by 86 nucleotides
Ac3H11_166 and Ac3H11_167 are separated by 144 nucleotides
Ac3H11_167 and Ac3H11_168 are separated by 115 nucleotides
Ac3H11_168 and Ac3H11_169 are separated by 4 nucleotides
Ac3H11_165 - Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10), at 50,864 to 52,006
_165
Ac3H11_166 - Glycine cleavage system H protein, at 52,093 to 52,467
_166
Ac3H11_167 - Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2), at 52,612 to 55,524
_167
Ac3H11_168 - FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8), at 55,640 to 56,044
_168
Ac3H11_169 - Albicidin resistance protein, at 56,049 to 57,101
_169
Group
Condition
Ac3H11
_165
Ac3H11
_166
Ac3H11
_167
Ac3H11
_168
Ac3H11
_169
nitrogen source
Ammonium chloride (N)
-1.2
-0.9
-1.1
-0.1
+0.4
carbon source
D-Glucose (C)
-0.9
-1.6
-0.4
+0.1
+0.7
carbon source
D-Glucose (C)
-0.9
-0.7
-0.4
-0.1
+0.0
nitrogen source
L-Alanine (N)
-0.3
-0.5
+0.1
-0.8
-0.2
carbon source
D-Mannose (C)
-0.4
-0.3
-0.3
-0.5
-0.1
stress
D-Cycloserine 0.05 mg/ml
-0.4
-0.5
+0.3
-0.1
-0.8
phage
phage 93.2
+0.1
-0.1
+0.1
-1.0
-0.4
carbon source
Tween 20 (C)
-0.4
-0.7
-0.4
+0.1
+0.1
stress
Chlorite 0.1 mM
-0.4
-0.8
+0.2
-0.0
+0.3
carbon source
L-Arabinose (C)
-0.5
-0.4
-0.1
+0.3
-0.1
lb
LB
+0.1
+0.4
-0.1
-0.8
-0.2
pH
LB, pH5
+0.1
+0.2
+0.1
-0.9
-0.1
phage
phage 93.1
+0.3
-0.0
+0.1
-0.7
-0.2
pH
LB, pH10
+0.3
+0.7
+0.0
-1.6
+0.0
nitrogen source
L-Leucine (N)
-0.5
+0.1
-0.5
+0.1
+0.3
carbon source
D-Galactose (C)
-0.3
-0.3
-0.2
+0.3
+0.3
stress
Paraquat dichloride 0.01 mg/ml
+0.2
-0.5
-0.1
-0.2
+0.5
pH
LB, pH9
+0.5
+0.3
+0.2
-0.9
-0.1
stress
syringaldehyde 2.5 mM
+0.2
-0.7
-0.0
+0.4
+0.2
stress
Doxycycline hyclate 0.000025 mg/ml
+0.1
+0.8
-0.0
+0.1
-0.3
motility
inner cut, R2A soft agar motility assay
+0.3
+0.8
-0.1
-0.1
-0.1
carbon source
a-Ketoglutaric (C)
+0.5
+0.7
-0.1
+0.1
-0.3
motility
inner cut, R2A soft agar motility assay
+0.0
+0.6
-0.2
-0.1
+0.8
carbon source
succinate (C)
+0.8
+0.7
+0.1
-0.3
-0.1
carbon source
D-Gluconic Acid (C)
+0.5
+0.9
-0.3
+0.0
+0.2
carbon source
succinate (C)
+0.5
+0.8
+0.1
-0.2
+0.2
carbon source
a-Ketoglutaric (C)
+0.6
+0.7
-0.2
+0.0
+0.3
pH
LB, pH10
+0.8
+1.3
+0.1
-0.5
+0.1
carbon source
D-Gluconic Acid (C)
+0.6
+0.6
-0.1
+0.6
+0.2
nitrogen source
L-tyrosine (N)
+1.9
+2.2
+0.1
+0.0
+0.1
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