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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_1659 and Ac3H11_1660 are separated by 0 nucleotides
Ac3H11_1660 and Ac3H11_1661 are separated by 43 nucleotides
Ac3H11_1661 and Ac3H11_1662 are separated by 243 nucleotides
Ac3H11_1662 and Ac3H11_1663 are separated by 55 nucleotides
Ac3H11_1659 - hypothetical protein, at 253,785 to 254,330
_1659
Ac3H11_1660 - ATP-dependent DNA helicase UvrD/PcrA, at 254,331 to 256,784
_1660
Ac3H11_1661 - hypothetical protein, at 256,828 to 257,535
_1661
Ac3H11_1662 - GMP reductase (EC 1.7.1.7), at 257,779 to 258,756
_1662
Ac3H11_1663 - putative esterase, at 258,812 to 259,693
_1663
Group
Condition
Ac3H11
_1659
Ac3H11
_1660
Ac3H11
_1661
Ac3H11
_1662
Ac3H11
_1663
stress
Cisplatin 0.005 mg/ml
-0.8
-2.1
-0.8
-0.2
-1.1
pH
LB, pH10
-0.4
-2.4
-0.2
-0.1
+0.2
stress
perchlorate 25 mM
-0.5
-2.3
-0.0
+0.2
-0.0
nitrogen source
L-Histidine (N)
-0.1
-2.3
-0.3
-0.0
+0.1
nitrogen source
L-Alanine (N)
-0.2
-2.4
-0.2
-0.1
+0.4
stress
sodium fluoride 35 mM
-0.4
-1.6
-0.2
-0.1
-0.1
motility
inner cut, R2A soft agar motility assay
-0.7
-1.1
-0.1
-0.3
-0.2
stress
Bacitracin 0.032 mg/ml
-0.7
-1.1
-0.0
+0.0
-0.4
stress
Dimethyl Sulfoxide 6 vol%
-0.1
-1.8
-0.2
-0.1
+0.0
stress
Aluminum chloride 2 mM
-0.7
-1.8
+0.1
+0.0
+0.2
carbon source
pyruvate (C)
-0.1
-1.6
-0.0
+0.0
-0.2
stress
Aluminum chloride 4 mM
-0.2
-1.7
-0.3
+0.1
+0.1
stress
2-Furfuraldehyde 0.06 vol%
+0.1
-1.6
-0.1
-0.1
-0.1
nitrogen source
D-Alanine (N)
-0.5
-1.3
+0.3
-0.4
+0.3
nitrogen source
L-Serine (N)
+0.3
-1.5
-0.1
-0.1
-0.1
stress
Sisomicin 0.004 mg/ml
-0.1
-1.5
-0.3
+0.2
+0.2
stress
nitrate 100 mM
+0.3
-1.4
-0.2
-0.3
+0.1
stress
Fusidic 0.001 mg/ml
-0.3
-0.9
-0.4
-0.1
+0.3
stress
Nickel (II) chloride 0.6 mM
-0.4
-1.5
+0.2
+0.4
+0.3
stress
Phosphomycin 0.02 mg/ml
-0.3
-1.1
-0.2
+0.1
+0.4
carbon source
D-Gluconic Acid (C)
+0.3
-1.9
+0.0
+0.1
+0.4
motility
inner cut, R2A soft agar motility assay
-0.1
-1.5
+0.4
+0.2
+0.1
stress
Cobalt chloride 0.4 mM
-0.1
-1.6
+0.4
+0.2
+0.4
phage
phage 93.1
-0.4
-1.1
+0.4
-0.2
+0.7
stress
Cisplatin 0.0025 mg/ml
-1.2
+1.0
-0.1
+0.0
-0.1
pH
LB, pH10
-0.9
+1.0
+0.0
-0.1
+0.9
phage
phage 93.1
-0.3
+1.1
+0.4
-0.2
+0.0
carbon source
succinate (C)
+0.1
+1.3
-0.2
+0.1
-0.2
stress
Doxycycline hyclate 0.000025 mg/ml
+0.1
+1.5
+0.0
+0.2
-0.2
stress
D-Cycloserine 0.05 mg/ml
+0.1
+1.5
+0.4
+0.3
+0.6
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