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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_1638 and Ac3H11_1639 are separated by 287 nucleotides
Ac3H11_1639 and Ac3H11_1640 are separated by 51 nucleotides
Ac3H11_1640 and Ac3H11_1641 are separated by 151 nucleotides
Ac3H11_1641 and Ac3H11_1642 are separated by 12 nucleotides
Ac3H11_1638 - Dienelactone hydrolase family, at 228,577 to 229,473
_1638
Ac3H11_1639 - Probable two-component response regulator, at 229,761 to 232,151
_1639
Ac3H11_1640 - Glutamate Aspartate periplasmic binding protein precursor GltI (TC 3.A.1.3.4), at 232,203 to 233,105
_1640
Ac3H11_1641 - Aspartate racemase (EC 5.1.1.13), at 233,257 to 234,051
_1641
Ac3H11_1642 - Glutamate Aspartate periplasmic binding protein precursor GltI (TC 3.A.1.3.4), at 234,064 to 234,954
_1642
Group
Condition
Ac3H11
_1638
Ac3H11
_1639
Ac3H11
_1640
Ac3H11
_1641
Ac3H11
_1642
nitrogen source
L-Alanine (N)
+0.0
-0.0
-0.1
-1.1
+0.1
nitrogen source
L-Arginine (N)
-0.2
-0.2
-0.4
-0.2
-0.2
stress
D-Cycloserine 0.05 mg/ml
-0.2
+0.0
-0.3
-0.6
-0.0
stress
nitrate 100 mM
+0.0
-0.1
-0.3
-0.5
+0.1
pH
LB, pH10
-0.1
+0.2
-0.4
-0.4
-0.1
stress
copper (II) chloride 1 mM
-0.1
+0.2
-0.2
-0.3
-0.3
carbon source
a-Ketoglutaric (C)
-0.5
+0.1
-0.1
-0.1
+0.1
stress
perchlorate 10 mM
-0.6
+0.2
+0.1
-0.1
-0.1
stress
Cisplatin 0.0025 mg/ml
+0.1
+0.2
-0.3
-0.5
+0.0
stress
Aluminum chloride 2 mM
-0.3
+0.4
-0.2
+0.0
-0.3
stress
Sisomicin 0.001 mg/ml
-0.1
+0.2
+0.1
-0.3
-0.2
stress
Tetracycline 0.0001 mg/ml
-0.2
+0.1
-0.2
-0.2
+0.2
nitrogen source
L-Isoleucine (N)
-0.2
+0.2
-0.3
-0.2
+0.2
stress
Chlorate 20 mM
-0.3
+0.3
-0.3
+0.2
-0.1
stress
copper (II) chloride 1 mM
-0.2
+0.5
-0.3
-0.1
-0.1
stress
Cobalt chloride 0.32 mM
-0.2
+0.6
-0.3
-0.3
+0.0
stress
A22 0.025 mg/ml
-0.6
+0.4
-0.1
+0.0
+0.1
stress
syringaldehyde 2.5 mM
-0.4
+0.6
-0.1
+0.1
-0.2
stress
Nickel (II) chloride 0.6 mM
-0.3
+0.8
-0.3
-0.2
+0.0
stress
Sisomicin 0.0005 mg/ml
-0.2
+0.5
-0.1
-0.1
-0.1
lb
LB
-0.3
+0.7
-0.1
-0.0
-0.1
stress
Paraquat dichloride 0.01 mg/ml
-0.2
+0.2
-0.3
+0.0
+0.6
motility
inner cut, R2A soft agar motility assay
-0.1
+0.1
+0.3
-0.2
+0.3
carbon source
L-Arabinose (C)
-0.2
-0.1
+0.2
+0.3
+0.2
carbon source
succinate (C)
-0.4
+0.1
+0.3
+0.1
+0.2
stress
Cobalt chloride 0.16 mM
-0.3
+0.8
+0.1
+0.0
-0.1
stress
Polymyxin B sulfate 0.0001 mg/ml
-0.2
+0.7
+0.0
+0.1
-0.1
lb
LB
-0.1
+0.7
-0.2
+0.2
-0.0
carbon source
a-Ketoglutaric (C)
+0.3
+0.1
-0.1
+0.8
+0.1
motility
inner cut, R2A soft agar motility assay
-0.5
+0.1
+0.2
+1.4
+0.2
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