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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_1629 and Ac3H11_1630 are separated by 67 nucleotides
Ac3H11_1630 and Ac3H11_1631 are separated by 129 nucleotides
Ac3H11_1631 and Ac3H11_1632 are separated by 177 nucleotides
Ac3H11_1632 and Ac3H11_1633 are separated by 127 nucleotides
Ac3H11_1629 - FIG00901576: hypothetical protein, at 218,756 to 219,364
_1629
Ac3H11_1630 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 219,432 to 220,871
_1630
Ac3H11_1631 - Tricarboxylate transport protein TctC, at 221,001 to 221,954
_1631
Ac3H11_1632 - Argininosuccinate lyase (EC 4.3.2.1), at 222,132 to 223,601
_1632
Ac3H11_1633 - Autolysin sensor kinase (EC 2.7.3.-), at 223,729 to 224,907
_1633
Group
Condition
Ac3H11
_1629
Ac3H11
_1630
Ac3H11
_1631
Ac3H11
_1632
Ac3H11
_1633
pH
LB, pH10
-2.5
+0.2
+0.0
N.D.
-0.1
motility
inner cut, R2A soft agar motility assay
-1.9
-0.1
-0.1
N.D.
+0.1
carbon source
D-Gluconic Acid (C)
-0.2
-0.2
-0.2
N.D.
-1.4
motility
inner cut, R2A soft agar motility assay
-1.1
-0.0
-0.3
N.D.
-0.4
stress
Bacitracin 0.032 mg/ml
-1.2
-0.2
+0.1
N.D.
-0.3
carbon source
D-Ribose (C)
-0.6
-0.3
+0.0
N.D.
-0.7
carbon source
D,L-Lactate (C)
-0.7
-0.4
-0.2
N.D.
-0.2
stress
nitrite 10 mM
-1.3
-0.0
+0.0
N.D.
-0.1
stress
sodium fluoride 25 mM
-1.3
-0.2
+0.1
N.D.
+0.0
nitrogen source
L-Arginine (N)
-0.9
+0.1
-0.1
N.D.
-0.5
carbon source
L-Lactate (C)
-0.3
-0.4
-0.1
N.D.
-0.3
carbon source
D-Lactate (C)
-0.7
-0.0
-0.2
N.D.
-0.2
stress
Cobalt chloride 0.32 mM
-0.9
+0.1
-0.3
N.D.
-0.1
stress
2-Furfuraldehyde 0.06 vol%
-1.1
+0.0
-0.0
N.D.
+0.1
stress
Doxycycline hyclate 0.000025 mg/ml
-1.3
+0.2
+0.1
N.D.
+0.1
carbon source
succinate (C)
+0.1
-0.3
-0.2
N.D.
-0.6
nitrogen source
Ammonium chloride (N)
-1.1
+0.1
-0.1
N.D.
+0.1
motility
inner cut, R2A soft agar motility assay
-0.7
-0.1
+0.3
N.D.
-0.1
stress
Sisomicin 0.0005 mg/ml
-0.9
+0.4
+0.0
N.D.
-0.0
carbon source
D-Gluconic Acid (C)
+0.4
-0.3
-0.1
N.D.
-0.6
stress
copper (II) chloride 1 mM
-1.0
+0.4
+0.1
N.D.
+0.1
stress
Phosphomycin 0.02 mg/ml
-0.8
+0.4
+0.0
N.D.
+0.1
stress
Nickel (II) chloride 0.6 mM
-0.3
+0.4
+0.2
N.D.
-0.4
stress
D-Cycloserine 0.05 mg/ml
-0.5
+0.0
-0.3
N.D.
+0.9
nitrogen source
L-Threonine (N)
-0.9
+0.3
+0.1
N.D.
+0.6
lb
LB
-0.5
+0.4
+0.3
N.D.
+0.0
phage
phage 93.1
+0.6
+0.4
-0.2
N.D.
-0.0
nitrogen source
L-Alanine (N)
+1.1
-0.7
-0.1
N.D.
+0.6
stress
Cobalt chloride 0.4 mM
+0.9
-0.4
+0.2
N.D.
+0.3
nitrogen source
L-Histidine (N)
+0.3
-0.1
+0.2
N.D.
+0.7
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